myRT

myRT report for GCA_002206385.2_ASM220638v2

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Seq: NJFR02000005.1 Serratia odorifera strain FDAARGOS_353 scf7180000000016_quiver_pilon, whole genome shotgun sequence (43491 bp)
Overview 1 RT 1: 19916-24035 bp Neighborhood of RT #1 [19916, 24064] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM type_I_hlyD COG3436 TnpB_IS66 Feature: gene Location: 19916-20188 bp Feature: gene Location: 20222-20995 bp Feature: domain Description: DDE_Tnp_IS66 Location: 20228-20843 bp Feature: domain Description: DDE_Tnp_IS66 Location: 20228-20843 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 20864-20975 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 20864-20975 bp Feature: gene Location: 21095-22345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21308-21965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 308-21 965 bp Feature: domain Description: GIIM Note: maturase Location: 22046-22265 bp Feature: domain Description: GIIM Note: maturase Location: 22046-22265 bp Feature: gene Location: 22819-23697 bp Feature: domain Description: type_I_hlyD Location: 22867-23101 bp Feature: domain Description: type_I_hlyD Location: 22867-231 01 bp Feature: domain Description: COG3436 Location: 23176-23647 bp Feature: domain Description: COG3436 Location: 231 76-23647 bp Feature: gene Location: 23717-24064 bp Feature: domain Description: TnpB_IS66 Location: 23744-24035 bp Feature: domain Description: TnpB_IS66 Location: 23744-24035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), type_I_hlyD (TIGR01843), COG3436 (Transposase ), TnpB_IS66 (pfam05717)

Seq: NJFR02000002.1 Serratia odorifera strain FDAARGOS_353 scf7180000000013_quiver_pilon, whole genome shotgun sequence (49008 bp)
Overview 1 RT 1: 26135-31360 bp Neighborhood of RT #1 [26135, 31365] TnpB_IS66 type_I_hlyD COG3436 RVT-GII GIIM PRK10490 PRK00315 Feature: gene Location: 26135-26482 bp Feature: domain Description: TnpB_IS66 Location: 26162-26453 bp Feature: domain Description: TnpB_IS66 Location: 2 6162 -2 6453 bp Feature: gene Location: 26502-27380 bp Feature: domain Description: type_I_hlyD Location: 26550-26784 bp Feature: domain Description: type_I_hlyD Location: 2 6550-2 6784 bp Feature: domain Description: COG3436 Location: 26859-27330 bp Feature: domain Description: COG3436 Location: 2 6859-2 7330 bp Feature: gene Location: 27854-29104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28067-28724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8067-2 872 4 bp Feature: domain Description: GIIM Note: maturase Location: 28805-29024 bp Feature: domain Description: GIIM Note: maturase Location: 2 8805-2 902 4 bp Feature: gene Location: 29188-30723 bp Feature: domain Description: PRK10490 Location: 29194-30724 bp Feature: domain Description: PRK10490 Location: 2 9194-3072 4 bp Feature: gene Location: 30796-31365 bp Feature: domain Description: PRK00315 Location: 30799-31360 bp Feature: domain Description: PRK00315 Location: 30799-31360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), type_I_hlyD (TIGR01843), COG3436 (Transposase ), RVT-GII, GIIM (pfam08388), PRK10490 (sensor protein KdpD; Provisional), PRK00315 (potassium-transporting ATPase subunit KdpC)

Seq: NJFR02000001.1 Serratia odorifera strain FDAARGOS_353 scf7180000000012_quiver_pilon, whole genome shotgun sequence (5308449 bp)
Overview 1 RT 1: 28190-33006 bp 2 RT 2: 253595-259486 bp 3 RT 3: 1404992-1412826 bp 4 RT 4: 2274799-2280966 bp 5 RT 5: 4515794-4520033 bp 6 RT 6: 4997111-5001398 bp Neighborhood of RT #1 [28190, 33006] PRK10529 PRK10490 RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #2 [253595, 259491] PRK10529 PRK10490 RVT-GII GIIM PRK10490 PRK00315 Neighborhood of RT #3 [1404992, 1412846] PQQ_syn_pqqF Gcd RVT-GII GIIM PQQ_membr_DH MhpC Neighborhood of RT #4 [2274799, 2280995] YejM DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM type_I_hlyD COG3436 TnpB_IS66 Neighborhood of RT #5 [4515794, 4520062] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM type_I_hlyD COG3436 TnpB_IS66 Neighborhood of RT #6 [4997111, 5001398] TnpB_IS66 type_I_hlyD COG3436 RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 28190-28879 bp Feature: domain Description: PRK10529 Location: 28208-28877 bp Feature: domain Description: PRK10529 Location: 28208-28877 bp Feature: gene Location: 28886-30052 bp Feature: domain Description: PRK10490 Location: 28889-30029 bp Feature: domain Description: PRK10490 Location: 28889-3 0029 bp Feature: gene Location: 30576-31826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30789-31446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 0789-3 1446 bp Feature: domain Description: GIIM Note: maturase Location: 31527-31746 bp Feature: domain Description: GIIM Note: maturase Location: 3 1527-3 1746 bp Feature: gene Location: 31927-32700 bp Feature: domain Description: DDE_Tnp_IS66 Location: 31933-32548 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3 193 3 -3 2548 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 32569-32680 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3 2569-3 2680 bp Feature: gene Location: 32734-33006 bp Feature: gene Location: 253595-254283 bp Feature: domain Description: PRK10529 Location: 253613-254156 bp Feature: domain Description: PRK10529 Location: 253 613 -254156 bp Feature: gene Location: 254290-255456 bp Feature: domain Description: PRK10490 Location: 254293-255433 bp Feature: domain Description: PRK10490 Location: 254293 -25543 3 bp Feature: gene Location: 255980-257230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256193-256850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256193 -256850 bp Feature: domain Description: GIIM Note: maturase Location: 256931-257150 bp Feature: domain Description: GIIM Note: maturase Location: 25693 1-257150 bp Feature: gene Location: 257314-258849 bp Feature: domain Description: PRK10490 Location: 257320-258850 bp Feature: domain Description: PRK10490 Location: 2573 20-258850 bp Feature: gene Location: 258922-259491 bp Feature: domain Description: PRK00315 Location: 258925-259486 bp Feature: domain Description: PRK003 15 Location: 258925-259486 bp Feature: gene Location: 1404992-1407319 bp Feature: domain Description: PQQ_syn_pqqF Location: 1405019-1407104 bp Feature: domain Description: PQQ_syn_pqqF Location: 1405019-1407104 bp Feature: gene Location: 1407508-1408137 bp Feature: domain Description: Gcd Location: 1407556-1408135 bp Feature: domain Description: Gcd Location: 1407556-140813 5 bp Feature: gene Location: 1408659-1409909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1408872-1409529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1408872-1409529 bp Feature: domain Description: GIIM Note: maturase Location: 1409610-1409829 bp Feature: domain Description: GIIM Note: maturase Location: 1409610-1409829 bp Feature: gene Location: 1409995-1411800 bp Feature: domain Description: PQQ_membr_DH Location: 1410010-1411795 bp Feature: domain Description: PQQ_membr_DH Location: 1410010-1411795 bp Feature: gene Location: 1411872-1412846 bp Feature: domain Description: MhpC Location: 1411977-1412826 bp Feature: domain Description: MhpC Location: 1411977-1412826 bp Feature: gene Location: 2274799-2276586 bp Feature: domain Description: YejM Location: 2274802-2276584 bp Feature: domain Description: YejM Location: 2274802-2276584 bp Feature: gene Location: 2277161-2277949 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2277164-2277794 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2277164-2277794 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2277818-2277929 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2277818-2277929 bp Feature: gene Location: 2278035-2279285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2278248-2278905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2278248-2278905 bp Feature: domain Description: GIIM Note: maturase Location: 2278986-2279205 bp Feature: domain Description: GIIM Note: maturase Location: 2278986-2279205 bp Feature: gene Location: 2279759-2280628 bp Feature: domain Description: type_I_hlyD Location: 2279780-2280059 bp Feature: domain Description: type_I_hlyD Location: 2279780-2280059 bp Feature: domain Description: COG3436 Location: 2280104-2280578 bp Feature: domain Description: COG3 43 6 Location: 2280104-2280578 bp Feature: gene Location: 2280648-2280995 bp Feature: domain Description: TnpB_IS66 Location: 2280675-2280966 bp Feature: domain Description: TnpB_IS66 Location: 2280675-2280966 bp Feature: gene Location: 4515794-4516042 bp Feature: gene Location: 4516229-4517017 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4516232-4516862 bp Feature: domain Description: DDE_Tnp_IS66 Location: 451623 2-4516862 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4516886-4516997 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4516886-4516997 bp Feature: gene Location: 4517103-4518344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4517307-4517964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45173 07-4517964 bp Feature: domain Description: GIIM Note: maturase Location: 4518045-4518264 bp Feature: domain Description: GIIM Note: maturase Location: 4518045-4518264 bp Feature: gene Location: 4518826-4519695 bp Feature: domain Description: type_I_hlyD Location: 4518847-4519126 bp Feature: domain Description: type_I_hlyD Location: 4518847-4519126 bp Feature: domain Description: COG3436 Location: 4519171-4519645 bp Feature: domain Description: COG3 43 6 Location: 4519171-4519645 bp Feature: gene Location: 4519715-4520062 bp Feature: domain Description: TnpB_IS66 Location: 4519742-4520033 bp Feature: domain Description: TnpB_IS66 Location: 4519742-452003 3 bp Feature: gene Location: 4997111-4997458 bp Feature: domain Description: TnpB_IS66 Location: 4997138-4997429 bp Feature: domain Description: TnpB_IS66 Location: 499713 8-4997429 bp Feature: gene Location: 4997478-4998347 bp Feature: domain Description: type_I_hlyD Location: 4997499-4997778 bp Feature: domain Description: type_I_hlyD Location: 4997499-4997778 bp Feature: domain Description: COG3436 Location: 4997823-4998297 bp Feature: domain Description: COG3 43 6 Location: 4997823 -4998297 bp Feature: gene Location: 4998828-5000069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4999032-4999689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499903 2-4999689 bp Feature: domain Description: GIIM Note: maturase Location: 4999770-4999989 bp Feature: domain Description: GIIM Note: maturase Location: 4999770-4999989 bp Feature: gene Location: 5000155-5000943 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5000158-5000788 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5000158-5000788 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5000812-5000923 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5000812-5000923 bp Feature: gene Location: 5000961-5001398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10529 (DNA-binding transcriptional activator KdpE; Provisional), PRK10490 (sensor protein KdpD; Provisional), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PRK00315 (potassium-transporting ATPase subunit KdpC), PQQ_syn_pqqF (TIGR02110), Gcd (COG4993), PQQ_membr_DH (TIGR03074)
MhpC (COG0596), YejM (COG3083), type_I_hlyD (TIGR01843), COG3436 (Transposase ), TnpB_IS66 (pfam05717)