myRT

myRT report for GCA_002206395.2_ASM220639v2

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Seq: NJFS02000003.1 Staphylococcus aureus strain FDAARGOS_356 unitig_6_quiver_quiver_pilon, whole genome shotgun sequence (2863059 bp)
Overview 1 RT 1: 25299-31115 bp 2 RT 2: 208104-211181 bp 3 RT 3: 757001-761534 bp 4 RT 4: 877820-879977 bp 5 RT 5: 1045936-1049043 bp 6 RT 6: 1235501-1239996 bp 7 RT 7: 1322919-1326796 bp 8 RT 8: 1714995-1720231 bp 9 RT 9: 1791410-1796761 bp 10 RT 10: 1817939-1821810 bp 11 RT 11: 1853977-1858582 bp 12 RT 12: 2035017-2039270 bp 13 RT 13: 2297570-2301600 bp 14 RT 14: 2430077-2434554 bp 15 RT 15: 2652546-2658056 bp 16 RT 16: 2718260-2722346 bp 17 RT 17: 2780712-2783832 bp Neighborhood of RT #1 [25299, 31147] COG3942 RVT-GII GIIM ABC2_membrane_3 Neighborhood of RT #2 [208104, 211181] RVT-GII GIIM Neighborhood of RT #3 [757001, 761557] RVT-GII GIIM PRK06753 Octopine_DH antiport_nhaC Neighborhood of RT #4 [877820, 879977] RVT-GII GIIM Neighborhood of RT #5 [1045936, 1049045] RVT-GII GIIM YdiL groES Neighborhood of RT #6 [1235501, 1240007] transald_staph RVT-GII GIIM YdiL YdiL Neighborhood of RT #7 [1322919, 1326801] RVT-GII GIIM UspA Ald Neighborhood of RT #8 [1714995, 1720236] CvfB RVT-GII GIIM ptsS_2 PstC Neighborhood of RT #9 [1791410, 1796761] PRK06349 PRK09034 RVT-GII GIIM Neighborhood of RT #10 [1817939, 1821810] MiaA PldB RVT-GII GIIM Neighborhood of RT #11 [1853977, 1858582] Pnp RVT-GII GIIM Neighborhood of RT #12 [2035017, 2039270] TypA DUF5325 RVT-GII GIIM Neighborhood of RT #13 [2297570, 2301600] tpiA PRK13962 RVT-GII GIIM Neighborhood of RT #14 [2430077, 2434559] Aes RVT-GII GIIM YkvI Neighborhood of RT #15 [2652546, 2658056] trehalose_treC PTS-IIBC-Tre RVT-GII GIIM Neighborhood of RT #16 [2718260, 2722346] Stap_Strp_toxin Stap_Strp_tox_C Stap_Strp_toxin Stap_Strp_tox_C RVT-GII GIIM Neighborhood of RT #17 [2780712, 2783832] YeiH RVT-GII GIIM Feature: gene Location: 25299-26192 bp Feature: domain Description: COG3942 Location: 25680-26190 bp Feature: domain Description: COG3942 Location: 25680-261 90 bp Feature: gene Location: 26521-28044 bp Feature: gene Location: 28127-29413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28343-28958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28343-28958 bp Feature: domain Description: GIIM Note: maturase Location: 29018-29252 bp Feature: domain Description: GIIM Note: maturase Location: 2901 8-29252 bp Feature: gene Location: 29474-29683 bp Feature: gene Location: 29981-31147 bp Feature: domain Description: ABC2_membrane_3 Location: 30032-31115 bp Feature: domain Description: ABC2_membrane_3 Location: 30032-31 1 1 5 bp Feature: gene Location: 208104-208730 bp Feature: gene Location: 208780-209202 bp Feature: gene Location: 209359-210645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209575-210190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209575-21 01 90 bp Feature: domain Description: GIIM Note: maturase Location: 210250-210484 bp Feature: domain Description: GIIM Note: maturase Location: 21 0250-21 0484 bp Feature: gene Location: 210706-210915 bp Feature: gene Location: 211002-211181 bp Feature: gene Location: 757001-757204 bp Feature: gene Location: 757291-757500 bp Feature: gene Location: 757561-758847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 757777-758392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 757777-758392 bp Feature: domain Description: GIIM Note: maturase Location: 758452-758686 bp Feature: domain Description: GIIM Note: maturase Location: 758452-758686 bp Feature: gene Location: 758980-760062 bp Feature: domain Description: PRK06753 Location: 758983-759106 bp Feature: domain Description: PRK06753 Location: 758983-7591 06 bp Feature: domain Description: Octopine_DH Location: 759541-759979 bp Feature: domain Description: Octopine_DH Location: 759541 -759979 bp Feature: gene Location: 760157-761557 bp Feature: domain Description: antiport_nhaC Location: 760169-761534 bp Feature: domain Description: antiport_nhaC Location: 7601 69-761 534 bp Feature: gene Location: 877820-878035 bp Feature: gene Location: 878122-878331 bp Feature: gene Location: 878392-879678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878608-879223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878608-879223 bp Feature: domain Description: GIIM Note: maturase Location: 879283-879517 bp Feature: domain Description: GIIM Note: maturase Location: 879283-87951 7 bp Feature: gene Location: 879791-879977 bp Feature: gene Location: 1045936-1046124 bp Feature: gene Location: 1046211-1046420 bp Feature: gene Location: 1046481-1047766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1046697-1047312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 046697-1 04731 2 bp Feature: domain Description: GIIM Note: maturase Location: 1047372-1047606 bp Feature: domain Description: GIIM Note: maturase Location: 1 047372-1 047606 bp Feature: gene Location: 1047843-1048586 bp Feature: domain Description: YdiL Location: 1047849-1048512 bp Feature: domain Description: YdiL Location: 1 047849-1 04851 2 bp Feature: gene Location: 1048761-1049045 bp Feature: domain Description: groES Location: 1048764-1049043 bp Feature: domain Description: groES Location: 1 048764-1 049043 bp Feature: gene Location: 1235501-1236214 bp Feature: domain Description: transald_staph Location: 1235504-1236212 bp Feature: domain Description: transald_staph Location: 1 235504-1 23621 2 bp Feature: gene Location: 1236505-1236714 bp Feature: gene Location: 1236775-1238060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1236991-1237606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 236991 -1 237606 bp Feature: domain Description: GIIM Note: maturase Location: 1237666-1237900 bp Feature: domain Description: GIIM Note: maturase Location: 1 237666-1 237900 bp Feature: gene Location: 1238585-1239205 bp Feature: domain Description: YdiL Location: 1238648-1239194 bp Feature: domain Description: YdiL Location: 1 238648-1 2391 94 bp Feature: gene Location: 1239372-1240007 bp Feature: domain Description: YdiL Location: 1239429-1239996 bp Feature: domain Description: YdiL Location: 1 239429-1 239996 bp Feature: gene Location: 1322919-1323143 bp Feature: gene Location: 1323230-1323439 bp Feature: gene Location: 1323500-1324786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1323716-1324331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 32371 6-1 324331 bp Feature: domain Description: GIIM Note: maturase Location: 1324391-1324625 bp Feature: domain Description: GIIM Note: maturase Location: 1 324391 -1 324625 bp Feature: gene Location: 1325042-1325542 bp Feature: domain Description: UspA Location: 1325051-1325477 bp Feature: domain Description: UspA Location: 1 325051 -1 325477 bp Feature: gene Location: 1325683-1326801 bp Feature: domain Description: Ald Location: 1325686-1326796 bp Feature: domain Description: Ald Location: 1 325686-1 326796 bp Feature: gene Location: 1714995-1715897 bp Feature: domain Description: CvfB Location: 1715010-1715865 bp Feature: domain Description: CvfB Location: 1 71 501 0-1 71 5865 bp Feature: gene Location: 1716289-1716498 bp Feature: gene Location: 1716559-1717845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1716775-1717390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 6775-1 71 7390 bp Feature: domain Description: GIIM Note: maturase Location: 1717450-1717684 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 7450-1 71 7684 bp Feature: gene Location: 1718136-1719119 bp Feature: domain Description: ptsS_2 Location: 1718139-1719006 bp Feature: domain Description: ptsS_2 Location: 1 71 81 39-1 71 9006 bp Feature: gene Location: 1719310-1720236 bp Feature: domain Description: PstC Location: 1719346-1720231 bp Feature: domain Description: PstC Location: 1 71 9346-1 720231 bp Feature: gene Location: 1791410-1792690 bp Feature: domain Description: PRK06349 Location: 1791413-1792457 bp Feature: domain Description: PRK06349 Location: 1 791 41 3-1 792457 bp Feature: gene Location: 1792881-1794263 bp Feature: domain Description: PRK09034 Location: 1792884-1794228 bp Feature: domain Description: PRK09034 Location: 1 792884-1 794228 bp Feature: gene Location: 1794340-1795626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1794556-1795171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 794556-1 7951 71 bp Feature: domain Description: GIIM Note: maturase Location: 1795231-1795465 bp Feature: domain Description: GIIM Note: maturase Location: 1 795231 -1 795465 bp Feature: gene Location: 1795687-1795896 bp Feature: gene Location: 1796186-1796761 bp Feature: gene Location: 1817939-1818874 bp Feature: domain Description: MiaA Location: 1817954-1818860 bp Feature: domain Description: MiaA Location: 1 81 7954-1 81 8860 bp Feature: gene Location: 1818892-1819806 bp Feature: domain Description: PldB Location: 1818901-1819798 bp Feature: domain Description: PldB Location: 1 81 8901 -1 81 9798 bp Feature: gene Location: 1819976-1821262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1820192-1820807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8201 92-1 820807 bp Feature: domain Description: GIIM Note: maturase Location: 1820867-1821101 bp Feature: domain Description: GIIM Note: maturase Location: 1 820867-1 821 1 01 bp Feature: gene Location: 1821323-1821532 bp Feature: gene Location: 1821619-1821810 bp Feature: gene Location: 1853977-1854075 bp Feature: gene Location: 1854250-1856346 bp Feature: domain Description: Pnp Location: 1854262-1856341 bp Feature: domain Description: Pnp Location: 1 854262-1 856341 bp Feature: gene Location: 1856736-1858022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1856952-1857567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 856952-1 857567 bp Feature: domain Description: GIIM Note: maturase Location: 1857627-1857861 bp Feature: domain Description: GIIM Note: maturase Location: 1 857627-1 857861 bp Feature: gene Location: 1858083-1858292 bp Feature: gene Location: 1858379-1858582 bp Feature: gene Location: 2035017-2036864 bp Feature: domain Description: TypA Location: 2035032-2036835 bp Feature: domain Description: TypA Location: 2035032-2036835 bp Feature: gene Location: 2036966-2037157 bp Feature: domain Description: DUF5325 Location: 2036978-2037155 bp Feature: domain Description: DUF5325 Location: 2036978-20371 55 bp Feature: gene Location: 2037331-2038617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2037547-2038162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2037547-20381 62 bp Feature: domain Description: GIIM Note: maturase Location: 2038222-2038456 bp Feature: domain Description: GIIM Note: maturase Location: 2038222-2038456 bp Feature: gene Location: 2038678-2038887 bp Feature: gene Location: 2038974-2039270 bp Feature: gene Location: 2297570-2298331 bp Feature: domain Description: tpiA Location: 2297576-2298323 bp Feature: domain Description: tpiA Location: 2297576-2298323 bp Feature: gene Location: 2298453-2299643 bp Feature: domain Description: PRK13962 Location: 2298456-2299638 bp Feature: domain Description: PRK1 3962 Location: 2298456-2299638 bp Feature: gene Location: 2299751-2301037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2299967-2300582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2299967-2300582 bp Feature: domain Description: GIIM Note: maturase Location: 2300642-2300876 bp Feature: domain Description: GIIM Note: maturase Location: 2300642-2300876 bp Feature: gene Location: 2301098-2301307 bp Feature: gene Location: 2301394-2301600 bp Feature: gene Location: 2430077-2430265 bp Feature: gene Location: 2430429-2431472 bp Feature: domain Description: Aes Location: 2430477-2431383 bp Feature: domain Description: Aes Location: 2430477-2431 383 bp Feature: gene Location: 2431600-2432886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2431816-2432431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2431 81 6-2432431 bp Feature: domain Description: GIIM Note: maturase Location: 2432491-2432725 bp Feature: domain Description: GIIM Note: maturase Location: 2432491 -2432725 bp Feature: gene Location: 2432947-2433156 bp Feature: gene Location: 2433492-2434559 bp Feature: domain Description: YkvI Location: 2433507-2434554 bp Feature: domain Description: YkvI Location: 2433507-2434554 bp Feature: gene Location: 2652546-2654186 bp Feature: domain Description: trehalose_treC Location: 2652567-2654115 bp Feature: domain Description: trehalose_treC Location: 2652567-26541 1 5 bp Feature: gene Location: 2654250-2655677 bp Feature: domain Description: PTS-IIBC-Tre Location: 2654268-2655639 bp Feature: domain Description: PTS-IIBC-Tre Location: 2654268-2655639 bp Feature: gene Location: 2656153-2657439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2656369-2656984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2656369-2656984 bp Feature: domain Description: GIIM Note: maturase Location: 2657044-2657278 bp Feature: domain Description: GIIM Note: maturase Location: 2657044-2657278 bp Feature: gene Location: 2657500-2657709 bp Feature: gene Location: 2657796-2658056 bp Feature: gene Location: 2718260-2718982 bp Feature: domain Description: Stap_Strp_toxin Location: 2718371-2718584 bp Feature: domain Description: Stap_Strp_toxin Location: 271 8371 -271 8584 bp Feature: domain Description: Stap_Strp_tox_C Location: 2718620-2718971 bp Feature: domain Description: Stap_Strp_tox_C Location: 271 8620-271 8971 bp Feature: gene Location: 2719149-2719949 bp Feature: domain Description: Stap_Strp_toxin Location: 2719311-2719581 bp Feature: domain Description: Stap_Strp_toxin Location: 271 931 1 -271 9581 bp Feature: domain Description: Stap_Strp_tox_C Location: 2719620-2719932 bp Feature: domain Description: Stap_Strp_tox_C Location: 271 9620-271 9932 bp Feature: gene Location: 2720515-2721801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2720731-2721346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2720731 -2721 346 bp Feature: domain Description: GIIM Note: maturase Location: 2721406-2721640 bp Feature: domain Description: GIIM Note: maturase Location: 2721 406-2721 640 bp Feature: gene Location: 2721862-2722071 bp Feature: gene Location: 2722158-2722346 bp Feature: gene Location: 2780712-2780936 bp Feature: gene Location: 2780935-2781930 bp Feature: domain Description: YeiH Location: 2780947-2781922 bp Feature: domain Description: YeiH Location: 2780947-2781 922 bp Feature: gene Location: 2782007-2783293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2782223-2782838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2782223-2782838 bp Feature: domain Description: GIIM Note: maturase Location: 2782898-2783132 bp Feature: domain Description: GIIM Note: maturase Location: 2782898-27831 32 bp Feature: gene Location: 2783354-2783563 bp Feature: gene Location: 2783650-2783832 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3942 (Surface antigen ), RVT-GII, GIIM (pfam08388), ABC2_membrane_3 (pfam12698), PRK06753 (hypothetical protein; Provisional), Octopine_DH (pfam02317), antiport_nhaC (TIGR00931), YdiL (COG1266), groES (PRK14533), transald_staph (TIGR02134)
UspA (COG0589), Ald (COG0686), CvfB (COG2996), ptsS_2 (TIGR02136), PstC (COG0573), PRK06349 (homoserine dehydrogenase; Provisional), PRK09034 (aspartate kinase; Reviewed), MiaA (COG0324), PldB (COG2267), Pnp (COG1185)
TypA (COG1217), DUF5325 (pfam17259), tpiA (PRK00042), PRK13962 (bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional), Aes (COG0657), YkvI (COG3949), trehalose_treC (TIGR02403), PTS-IIBC-Tre (TIGR01992), Stap_Strp_toxin (pfam01123), Stap_Strp_tox_C (pfam02876)
YeiH (COG2855)