myRT

myRT report for GCA_002206925.1_ASM220692v1

Download annotations/find similar RTs

Seq: BDPD01000023.1 Escherichia coli DNA, contig: ERS077693.7521_3_22.23, whole genome shotgun sequence (77039 bp)
Overview 1 RT 1: 51208-55090 bp Neighborhood of RT #1 [51208, 55095] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 51208-51666 bp Feature: domain Description: dut Location: 51214-51661 bp Feature: domain Description: dut Location: 51 21 4-51 661 bp Feature: gene Location: 51773-52369 bp Feature: domain Description: slmA Location: 51779-52355 bp Feature: domain Description: slmA Location: 51 779-52355 bp Feature: gene Location: 52415-53374 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52550-53099 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52550-53099 bp Feature: gene Location: 53672-54328 bp Feature: domain Description: pyrE Location: 53690-54323 bp Feature: domain Description: pyrE Location: 53690-54323 bp Feature: gene Location: 54379-55095 bp Feature: domain Description: rph Location: 54382-55090 bp Feature: domain Description: rph Location: 54382-55090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: BDPD01000026.1 Escherichia coli DNA, contig: ERS077693.7521_3_22.26, whole genome shotgun sequence (56956 bp)
Overview 1 RT 1: 15421-19712 bp Neighborhood of RT #1 [15421, 19712] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 15421-16683 bp Feature: domain Description: YesM Location: 15934-16675 bp Feature: domain Description: YesM Location: 15934-16675 bp Feature: gene Location: 16713-16883 bp Feature: gene Location: 17233-17754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17239-17521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172 39-1752 1 bp Feature: domain Description: GIIM Note: maturase Location: 17569-17749 bp Feature: domain Description: GIIM Note: maturase Location: 17569-17749 bp Feature: gene Location: 17782-18321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18112-18190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18112 -18190 bp Feature: gene Location: 18352-18549 bp Feature: gene Location: 18807-19712 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: BDPD01000068.1 Escherichia coli DNA, contig: ERS077693.7521_3_22.68, whole genome shotgun sequence (2457 bp)
Overview 1 RT 1: 103-2389 bp Neighborhood of RT #1 [103, 2454] RVT-GII GIIM PHA02517 Feature: gene Location: 103-1626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 76-1108 bp Feature: domain Description: GIIM Note: maturase Location: 1183-1381 bp Feature: domain Description: GIIM Note: maturase Location: 1183 -13 81 bp Feature: gene Location: 2218-2454 bp Feature: domain Description: PHA02517 Location: 2221-2389 bp Feature: domain Description: PHA02517 Location: 2221-23 89 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)