myRT

myRT report for GCA_002207125.1_ASM220712v1

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Seq: BDPN01000007.1 Escherichia coli DNA, contig: ERS077736.7521_4_65.7, whole genome shotgun sequence (217897 bp)
Overview 1 RT 1: 57461-60656 bp 2 RT 2: 162609-166488 bp Neighborhood of RT #1 [57461, 60656] RVT-Retrons Neighborhood of RT #2 [162609, 166493] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 57461-57700 bp Feature: gene Location: 57910-58119 bp Feature: gene Location: 58468-59403 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 58579-59164 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 58579-591 64 bp Feature: gene Location: 59403-60365 bp Feature: gene Location: 60405-60656 bp Feature: gene Location: 162609-163325 bp Feature: domain Description: rph Location: 162612-163320 bp Feature: domain Description: rph Location: 1 6261 2-1 63320 bp Feature: gene Location: 163376-164032 bp Feature: domain Description: pyrE Location: 163394-164027 bp Feature: domain Description: pyrE Location: 1 63394-1 64027 bp Feature: gene Location: 164329-165288 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 164464-165013 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 64464-1 6501 3 bp Feature: gene Location: 165332-165928 bp Feature: domain Description: slmA Location: 165338-165914 bp Feature: domain Description: slmA Location: 1 65338-1 6591 4 bp Feature: gene Location: 166035-166493 bp Feature: domain Description: dut Location: 166041-166488 bp Feature: domain Description: dut Location: 1 66041 -1 66488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, rph (PRK00173), pyrE (TIGR00336), slmA (PRK09480), dut (TIGR00576)

Seq: BDPN01000022.1 Escherichia coli DNA, contig: ERS077736.7521_4_65.22, whole genome shotgun sequence (35302 bp)
Overview 1 RT 1: 4035-10410 bp Neighborhood of RT #1 [4035, 10415] RVT-GII GIIM RAYT PRK11447 Feature: gene Location: 4035-4172 bp Feature: gene Location: 4262-4531 bp Feature: gene Location: 4556-5902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4844-5462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4844-5462 bp Feature: domain Description: GIIM Note: maturase Location: 5510-5741 bp Feature: domain Description: GIIM Note: maturase Location: 5510-5741 bp Feature: gene Location: 6056-6595 bp Feature: domain Description: RAYT Location: 6134-6497 bp Feature: domain Description: RAYT Location: 6134-6497 bp Feature: gene Location: 6942-10415 bp Feature: domain Description: PRK11447 Location: 6945-10410 bp Feature: domain Description: PRK11447 Location: 6945-10410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RAYT (COG1943), PRK11447 (cellulose synthase subunit BcsC; Provisional)

Seq: BDPN01000032.1 Escherichia coli DNA, contig: ERS077736.7521_4_65.32, whole genome shotgun sequence (9777 bp)
Overview 1 RT 1: 192-4928 bp Neighborhood of RT #1 [192, 5005] PHA02517 RVT-GII GIIM PHA02517 Met_dep_hydrolase_A Feature: gene Location: 192-596 bp Feature: domain Description: PHA02517 Location: 198-531 bp Feature: domain Description: PHA02517 Location: 198-53 1 bp Feature: gene Location: 1188-2711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1461-2193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1461-2193 bp Feature: domain Description: GIIM Note: maturase Location: 2268-2466 bp Feature: domain Description: GIIM Note: maturase Location: 2268-2466 bp Feature: gene Location: 2876-3280 bp Feature: domain Description: PHA02517 Location: 2879-3260 bp Feature: domain Description: PHA02517 Location: 2879-3 260 bp Feature: gene Location: 3539-5005 bp Feature: domain Description: Met_dep_hydrolase_A Location: 3872-4928 bp Feature: domain Description: Met_dep_hydrolase_A Location: 3 872-4928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), Met_dep_hydrolase_A (cd01299)