myRT

myRT report for GCA_002207285.1_ASM220728v1

Download annotations/find similar RTs

Seq: BDPV01000002.1 Escherichia coli DNA, contig: ERS077732.7521_4_61.2, whole genome shotgun sequence (526308 bp)
Overview 1 RT 1: 335442-339733 bp Neighborhood of RT #1 [335442, 339733] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 335442-336704 bp Feature: domain Description: YesM Location: 335955-336696 bp Feature: domain Description: YesM Location: 335955-336696 bp Feature: gene Location: 336734-336904 bp Feature: gene Location: 337254-337775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337260-337542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337260-337542 bp Feature: domain Description: GIIM Note: maturase Location: 337590-337770 bp Feature: domain Description: GIIM Note: maturase Location: 337590-337770 bp Feature: gene Location: 337803-338342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338133-338211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3381 33-33821 1 bp Feature: gene Location: 338373-338570 bp Feature: gene Location: 338828-339733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: BDPV01000020.1 Escherichia coli DNA, contig: ERS077732.7521_4_61.20, whole genome shotgun sequence (77013 bp)
Overview 1 RT 1: 21904-25786 bp Neighborhood of RT #1 [21904, 25791] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 21904-22620 bp Feature: domain Description: rph Location: 21907-22615 bp Feature: domain Description: rph Location: 2 1907-2 2 615 bp Feature: gene Location: 22671-23327 bp Feature: domain Description: pyrE Location: 22689-23322 bp Feature: domain Description: pyrE Location: 2 2 689-2 332 2 bp Feature: gene Location: 23625-24584 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23760-24309 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 3760-2 4309 bp Feature: gene Location: 24630-25226 bp Feature: domain Description: slmA Location: 24636-25212 bp Feature: domain Description: slmA Location: 2 4636-2 52 12 bp Feature: gene Location: 25333-25791 bp Feature: domain Description: dut Location: 25339-25786 bp Feature: domain Description: dut Location: 2 5339-2 5786 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: BDPV01000054.1 Escherichia coli DNA, contig: ERS077732.7521_4_61.54, whole genome shotgun sequence (1579 bp)
Overview 1 RT 1: 3-1535 bp Neighborhood of RT #1 [3, 1537] RVT-GII GIIM PHA02517 Feature: gene Location: 3-1004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-486 bp Feature: domain Description: GIIM Note: maturase Location: 561-759 bp Feature: domain Description: GIIM Note: maturase Location: 561-759 bp Feature: gene Location: 1166-1537 bp Feature: domain Description: PHA02517 Location: 1172-1535 bp Feature: domain Description: PHA02517 Location: 1172-153 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: BDPV01000059.1 Escherichia coli DNA, contig: ERS077732.7521_4_61.59, whole genome shotgun sequence (755 bp)
Overview 1 RT 1: 194-704 bp Neighborhood of RT #1 [194, 718] RVT-GII Feature: gene Location: 194-718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 467-704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 67-704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BDPV01000062.1 Escherichia coli DNA, contig: ERS077732.7521_4_61.62, whole genome shotgun sequence (563 bp)
Overview 1 RT 1: 3-561 bp Neighborhood of RT #1 [3, 560] RVT-GII Feature: gene Location: 3-560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225-561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225 -5 61 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII