myRT

myRT report for GCA_002207545.1_ASM220754v1

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Seq: BDRI01000004.1 Escherichia coli DNA, contig: ERS077670.7521_2_95.4, whole genome shotgun sequence (245994 bp)
Overview 1 RT 1: 174-5430 bp Neighborhood of RT #1 [174, 5430] RVT-UG5 nitrilase PRK09692 Feature: gene Location: 174-863 bp Feature: gene Location: 860-3745 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1337-1868 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 337-1 868 bp Feature: domain Description: nitrilase Location: 3038-3671 bp Feature: domain Description: nitrilase Location: 3038-3671 bp Feature: gene Location: 3811-5061 bp Feature: domain Description: PRK09692 Location: 3820-5020 bp Feature: domain Description: PRK09692 Location: 3820-5020 bp Feature: gene Location: 5206-5430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), PRK09692 (Integrase; provisional)

Seq: BDRI01000020.1 Escherichia coli DNA, contig: ERS077670.7521_2_95.20, whole genome shotgun sequence (88591 bp)
Overview 1 RT 1: 184-2713 bp Neighborhood of RT #1 [184, 2778] RVT-GII GIIM PHA02517 Feature: gene Location: 184-1707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-1189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-1189 bp Feature: domain Description: GIIM Note: maturase Location: 1264-1462 bp Feature: domain Description: GIIM Note: maturase Location: 12 64-1462 bp Feature: gene Location: 1661-2086 bp Feature: gene Location: 2299-2778 bp Feature: domain Description: PHA02517 Location: 2359-2713 bp Feature: domain Description: PHA02 517 Location: 2 359-2 713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: BDRI01000022.1 Escherichia coli DNA, contig: ERS077670.7521_2_95.22, whole genome shotgun sequence (77024 bp)
Overview 1 RT 1: 21924-25806 bp Neighborhood of RT #1 [21924, 25811] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 21924-22640 bp Feature: domain Description: rph Location: 21927-22635 bp Feature: domain Description: rph Location: 21927-2263 5 bp Feature: gene Location: 22691-23347 bp Feature: domain Description: pyrE Location: 22709-23342 bp Feature: domain Description: pyrE Location: 22709-23 3 42 bp Feature: gene Location: 23645-24604 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23780-24329 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23 780-243 29 bp Feature: gene Location: 24650-25246 bp Feature: domain Description: slmA Location: 24656-25232 bp Feature: domain Description: slmA Location: 24656-2523 2 bp Feature: gene Location: 25353-25811 bp Feature: domain Description: dut Location: 25359-25806 bp Feature: domain Description: dut Location: 253 59-25806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: BDRI01000110.1 Escherichia coli DNA, contig: ERS077670.7521_2_95.110, whole genome shotgun sequence (2165 bp)
Overview 1 RT 1: 189-1664 bp Neighborhood of RT #1 [189, 1669] RVT-GII GIIM PHA02517 PHA02517 Feature: gene Location: 189-356 bp Feature: gene Location: 382-1140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 391-763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 391-763 bp Feature: domain Description: GIIM Note: maturase Location: 841-1063 bp Feature: domain Description: GIIM Note: maturase Location: 84 1-1063 bp Feature: gene Location: 1124-1384 bp Feature: domain Description: PHA02517 Location: 1133-1382 bp Feature: domain Description: PHA02517 Location: 1133-1382 bp Feature: gene Location: 1484-1669 bp Feature: domain Description: PHA02517 Location: 1487-1664 bp Feature: domain Description: PHA02517 Location: 14 87-1664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)