myRT

myRT report for GCA_002207995.1_ASM220799v1

Download annotations/find similar RTs

Seq: NHZE01000151.1 Pantoea sp. VS1 152__len__27944, whole genome shotgun sequence (27944 bp)
Overview 1 RT 1: 24522-27854 bp Neighborhood of RT #1 [24522, 27881] T3SC_IA_DspF-like PleD RVT-GII MPTase-PolyVal HTH_Tnp_1 Feature: gene Location: 24522-24941 bp Ori: OWS72931.1 Feature: domain Description: T3SC_IA_DspF-like Location: 24546-24906 bp Feature: domain Description: T3SC_IA_DspF-like Location: 24546-24906 bp Feature: gene Location: 25060-25212 bp Ori: OWS72932.1 Feature: domain Description: PleD Location: 25066-25189 bp Feature: domain Description: PleD Location: 25066-251 89 bp Feature: gene Location: 25464-25994 bp Ori: OWS72933.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25497-25683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25497-25683 bp Feature: gene Location: 26503-26673 bp Feature: domain Description: MPTase-PolyVal Location: 26506-26632 bp Feature: domain Description: MPTase-PolyVal Location: 26506-26632 bp Feature: gene Location: 27644-27881 bp Ori: OWS72934.1 Feature: domain Description: HTH_Tnp_1 Location: 27656-27854 bp Feature: domain Description: HTH_Tnp_1 Location: 27656-27854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T3SC_IA_DspF-like (cd17024), PleD (COG3706), RVT-GII, MPTase-PolyVal (pfam18818), HTH_Tnp_1 (pfam01527)

Seq: NHZE01000038.1 Pantoea sp. VS1 38__len__52634, whole genome shotgun sequence (52634 bp)
Overview 1 RT 1: 48662-52635 bp Neighborhood of RT #1 [48662, 52634] Pectate_lyase_3 Ogr_Delta RVT-UG14 Feature: gene Location: 48662-50407 bp Ori: OWS75067.1 Feature: domain Description: Pectate_lyase_3 Location: 48881-49634 bp Feature: domain Description: Pectate_lyase_3 Location: 48881-49634 bp Feature: gene Location: 50984-51307 bp Ori: OWS75068.1 Feature: domain Description: Ogr_Delta Location: 51005-51143 bp Feature: domain Description: Ogr_Delta Location: 51005-51143 bp Feature: gene Location: 51792-52634 bp Ori: OWS75069.1 Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 52197-52635 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 52 197-52 635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pectate_lyase_3 (pfam12708), Ogr_Delta (pfam04606), RVT-UG14

Seq: NHZE01000043.1 Pantoea sp. VS1 43__len__253, whole genome shotgun sequence (253 bp)
Overview 1 RT 1: 1-103 bp Neighborhood of RT #1 [1, 253] RVT-UG14 Feature: gene Location: 1-253 bp Ori: OWS74620.1 Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 4-103 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 4-103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG14