myRT

myRT report for GCA_002208025.1_ASM220802v1

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Seq: NBSE01000053.1 Escherichia coli strain ECC8 Cotig_52, whole genome shotgun sequence (22242 bp)
Overview 1 RT 1: 1-2583 bp Neighborhood of RT #1 [1, 2856] RVT-GII IS285 YhhI YhhI Feature: gene Location: 1-202 bp Feature: gene Location: 910-1197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1075-1183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 075-1 1 83 bp Feature: gene Location: 1246-1997 bp Feature: domain Description: IS285 Location: 1276-1966 bp Feature: domain Description: IS285 Location: 1 276-1 966 bp Feature: gene Location: 2160-2856 bp Feature: domain Description: YhhI Location: 2166-2412 bp Feature: domain Description: YhhI Location: 21 66-241 2 bp Feature: domain Description: YhhI Location: 2475-2583 bp Feature: domain Description: YhhI Location: 2475-2583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), YhhI (COG5433), RVT-GII

Seq: NBSE01000068.1 Escherichia coli strain ECC8 Cotig_68, whole genome shotgun sequence (4750 bp)
Overview 1 RT 1: 1-3933 bp Neighborhood of RT #1 [1, 3938] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 1-140 bp Feature: gene Location: 141-377 bp Feature: gene Location: 1094-2995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1361-2192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1361-2 192 bp Feature: domain Description: Intron_maturas2 Location: 2306-2564 bp Feature: domain Description: Intron_maturas2 Location: 2 306-2 564 bp Feature: domain Description: HNHc Note: nucleases Location: 2738-2900 bp Feature: domain Description: HNHc Note: nucleases Location: 2 738-2 900 bp Feature: gene Location: 3145-3642 bp Feature: domain Description: PRK13732 Location: 3148-3640 bp Feature: domain Description: PRK13732 Location: 3148-3640 bp Feature: gene Location: 3705-3938 bp Feature: domain Description: DUF905 Location: 3735-3933 bp Feature: domain Description: DUF905 Location: 3735-3933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF905 (pfam06006)

Seq: NBSE01000008.1 Escherichia coli strain ECC8 Cotig_51, whole genome shotgun sequence (139615 bp)
Overview 1 RT 1: 50875-54752 bp Neighborhood of RT #1 [50875, 54757] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 50875-51328 bp Feature: domain Description: dut Location: 50878-51016 bp Feature: domain Description: dut Location: 50878-51016 bp Feature: gene Location: 51435-52031 bp Feature: domain Description: slmA Location: 51441-52017 bp Feature: domain Description: slmA Location: 51441-52017 bp Feature: gene Location: 52077-53036 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52212-52761 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52212-52761 bp Feature: gene Location: 53334-53975 bp Feature: domain Description: pyrE Location: 53337-53970 bp Feature: domain Description: pyrE Location: 53 3 3 7-53 970 bp Feature: gene Location: 54041-54757 bp Feature: domain Description: rph Location: 54044-54752 bp Feature: domain Description: rph Location: 54044-54752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)