myRT

myRT report for GCA_002208045.1_SJD12

Download annotations/find similar RTs

Seq: KZ253970.1 Porphyromonas gingivalis SJD12 genomic scaffold scaffold2, whole genome shotgun sequence (95665 bp)
Overview 1 RT 1: 72175-77725 bp Neighborhood of RT #1 [72175, 78186] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4141 Feature: gene Location: 72175-72552 bp Ori: OWR82807.1 Feature: domain Description: DUF4133 Location: 72193-72463 bp Feature: domain Description: DUF41 33 Location: 721 93-72463 bp Feature: gene Location: 72549-74642 bp Ori: OWR82808.1 Feature: domain Description: Bac_Flav_CT_G Location: 72552-74628 bp Feature: domain Description: Bac_Flav_CT_G Location: 72552-74628 bp Feature: gene Location: 75189-77000 bp Ori: OWR82809.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75453-76275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75453-76275 bp Feature: domain Description: Intron_maturas2 Location: 76359-76677 bp Feature: domain Description: Intron_maturas2 Location: 76359-76677 bp Feature: domain Description: HNHc Note: nucleases Location: 76821-76971 bp Feature: domain Description: HNHc Note: nucleases Location: 76821 -76971 bp Feature: gene Location: 77078-77524 bp Ori: OWR82810.1 Feature: domain Description: Bac_Flav_CT_G Location: 77096-77519 bp Feature: domain Description: Bac_Flav_CT_G Location: 77096-7751 9 bp Feature: gene Location: 77575-78186 bp Ori: OWR82811.1 Feature: domain Description: DUF4141 Location: 77578-77725 bp Feature: domain Description: DUF41 41 Location: 77578-77725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605)

Seq: KZ253983.1 Porphyromonas gingivalis SJD12 genomic scaffold scaffold15, whole genome shotgun sequence (34338 bp)
Overview 1 RT 1: 20711-27306 bp Neighborhood of RT #1 [20711, 27404] Cas2_I_II_III CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III Cmr6_III-B cas_Cmr5 Feature: gene Location: 20711-20956 bp Feature: gene Location: 22736-23026 bp Ori: OWR82962.1 Feature: domain Description: Cas2_I_II_III Location: 22757-22976 bp Feature: domain Description: Cas2 _I_II_III Location: 2 2 757-2 2 976 bp Feature: gene Location: 23046-26141 bp Ori: OWR82963.1 Feature: domain Description: CRISPR_Cas6 Location: 23580-23934 bp Feature: domain Description: CRISPR_Cas6 Location: 2 3580-2 3934 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 24084-24696 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 4084-2 4696 bp Feature: domain Description: Cas1_I-II-III Location: 25146-26100 bp Feature: domain Description: Cas1_I-II-III Location: 2 5146-2 6100 bp Feature: gene Location: 26197-26964 bp Ori: OWR82964.1 Feature: domain Description: Cmr6_III-B Location: 26275-26947 bp Feature: domain Description: Cmr6_III-B Location: 2 62 75-2 6947 bp Feature: gene Location: 26961-27404 bp Ori: OWR82965.1 Feature: domain Description: cas_Cmr5 Location: 27000-27306 bp Feature: domain Description: cas_Cmr5 Location: 2 7000-2 7306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), cas_Cmr5 (TIGR01881)