myRT

myRT report for GCA_002210225.1_ASM221022v1

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Seq: MWUJ01000035.1 Geofilum rhodophaeum strain HF401 contig35, whole genome shotgun sequence (10850 bp)
Overview 1 RT 1: 2301-5953 bp Neighborhood of RT #1 [2301, 6627] Avd_like DUF1566 RVT-DGRs IstB_IS21 HTH_LUXR COG4584 Feature: gene Location: 2301-2642 bp Feature: domain Description: Avd_like Location: 2328-2631 bp Feature: domain Description: Avd_like Location: 2328-2631 bp Feature: gene Location: 2789-3031 bp Feature: domain Description: DUF1566 Location: 2840-2960 bp Feature: domain Description: DUF1 566 Location: 2840-2960 bp Feature: gene Location: 3163-4158 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3277-3976 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3277-3976 bp Feature: gene Location: 4303-5028 bp Feature: domain Description: IstB_IS21 Location: 4468-4987 bp Feature: domain Description: IstB_IS21 Location: 4468-4987 bp Feature: gene Location: 5059-6627 bp Feature: domain Description: HTH_LUXR Location: 5098-5197 bp Feature: domain Description: HTH_LUXR Location: 5098-51 97 bp Feature: domain Description: COG4584 Location: 5290-5953 bp Feature: domain Description: COG4584 Location: 5290-5953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), DUF1566 (pfam07603), RVT-DGRs, IstB_IS21 (pfam01695), HTH_LUXR (smart00421), COG4584 (Transposase )

Seq: MWUJ01000007.1 Geofilum rhodophaeum strain HF401 contig7, whole genome shotgun sequence (184872 bp)
Overview 1 RT 1: 179631-183988 bp Neighborhood of RT #1 [179631, 183988] arc_metj ParE RVT-GII GIIM Feature: gene Location: 179631-179879 bp Feature: domain Description: arc_metj Location: 179643-179757 bp Feature: domain Description: arc_metj Location: 179643-179757 bp Feature: gene Location: 180130-180435 bp Feature: domain Description: ParE Location: 180142-180421 bp Feature: domain Description: ParE Location: 180142 -18042 1 bp Feature: gene Location: 180867-182117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181080-181737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181080-181737 bp Feature: domain Description: GIIM Note: maturase Location: 181824-182028 bp Feature: domain Description: GIIM Note: maturase Location: 18182 4-182 02 8 bp Feature: gene Location: 183235-183402 bp Feature: gene Location: 183413-183988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT arc_metj (LOAD_arc_metj), ParE (COG3668), RVT-GII, GIIM (pfam08388)