myRT

myRT report for GCA_002211125.1_ASM221112v1

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Seq: NIDM01000073.1 Klebsiella pneumoniae strain SCPM-O-B-7851 (KPI-3014) plasmid unnamed NODE_73_length_2189_cov_19.0388, whole genome shotgun sequence (2189 bp)
Overview 1 RT 1: 610-1879 bp Neighborhood of RT #1 [610, 2103] RVT_N RVT-GII GIIM Feature: gene Location: 610-2103 bp Ori: OWV39330.1 Gene: ltrA Feature: domain Description: RVT_N Location: 655-898 bp Feature: domain Description: RVT_N Location: 655-898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 943-1591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 943-1 591 bp Feature: domain Description: GIIM Note: maturase Location: 1651-1879 bp Feature: domain Description: GIIM Note: maturase Location: 1 651 -1 879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NIDM01000006.1 Klebsiella pneumoniae strain SCPM-O-B-7851 (KPI-3014) NODE_6_length_303647_cov_10.1246, whole genome shotgun sequence (303647 bp)
Overview 1 RT 1: 264752-272100 bp Neighborhood of RT #1 [264752, 272150] FimC FimD RVT-UG4 Integrase_1 PRK09692 Feature: gene Location: 264752-265516 bp Ori: OWV55997.1 Feature: domain Description: FimC Location: 264797-265499 bp Feature: domain Description: FimC Location: 2 64797-2 65499 bp Feature: gene Location: 265563-268157 bp Ori: OWV55998.1 Feature: domain Description: FimD Location: 265605-268146 bp Feature: domain Description: FimD Location: 2 65605-2 68146 bp Feature: gene Location: 268154-270235 bp Ori: OWV55999.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 268565-269009 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2 68565-2 69009 bp Feature: gene Location: 270277-270732 bp Ori: OWV56000.1 Feature: domain Description: Integrase_1 Location: 270280-270514 bp Feature: domain Description: Integrase_1 Location: 2 702 80-2 70514 bp Feature: gene Location: 270912-272150 bp Feature: domain Description: PRK09692 Location: 270918-272100 bp Feature: domain Description: PRK09692 Location: 2 70918-2 72 100 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), PRK09692 (Integrase; provisional)