myRT

myRT report for GCA_002212765.2_ASM221276v2

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Seq: MTCS02000020.1 Haliangium sp. UPWRP_2, whole genome shotgun sequence (23499 bp)
Overview 1 RT 1: 6293-11591 bp Neighborhood of RT #1 [6293, 11683] KOG1046 Tra5 RVT-GII GIIM HTH_21 Feature: gene Location: 6293-8896 bp Feature: domain Description: KOG1046 Location: 6308-8879 bp Feature: domain Description: KOG1 046 Location: 6308-8879 bp Feature: gene Location: 9032-9682 bp Feature: domain Description: Tra5 Location: 9134-9542 bp Feature: domain Description: Tra5 Location: 91 34-9542 bp Feature: gene Location: 9679-10935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9877-10534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9877-1 0534 bp Feature: domain Description: GIIM Note: maturase Location: 10615-10831 bp Feature: domain Description: GIIM Note: maturase Location: 1 061 5-1 0831 bp Feature: gene Location: 10932-11258 bp Feature: gene Location: 11438-11683 bp Feature: domain Description: HTH_21 Location: 11447-11591 bp Feature: domain Description: HTH_21 Location: 1 1 447-1 1 591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_21 (pfam13276), KOG1046 (KOG1046, Puromycin-sensitive aminopeptidase and related aminopeptidases ), Tra5 (COG2801), RVT-GII, GIIM (pfam08388)

Seq: MTCS02000024.1 Haliangium sp. UPWRP_2, whole genome shotgun sequence (20589 bp)
Overview 1 RT 1: 5166-15777 bp Neighborhood of RT #1 [5166, 15800] vWFA GATase1_like vWA_subgroup GATase1_like SDR_c5 RVT-Retrons HEAT HEAT HEAT HEAT Aldo_ket_red ACT_MalLac-Enz SfcA Feature: gene Location: 5166-8216 bp Feature: domain Description: vWFA Location: 5682-6069 bp Feature: domain Description: vWFA Location: 5682 -6069 bp Feature: domain Description: GATase1_like Location: 6582-6762 bp Feature: domain Description: GATase1_like Location: 6582 -6762 bp Feature: domain Description: vWA_subgroup Location: 6798-7281 bp Feature: domain Description: vWA_subgroup Location: 6798-72 81 bp Feature: domain Description: GATase1_like Location: 7362-7590 bp Feature: domain Description: GATase1_like Location: 7362 -7590 bp Feature: gene Location: 8267-9082 bp Feature: domain Description: SDR_c5 Location: 8327-9068 bp Feature: domain Description: SDR_c5 Location: 832 7-9068 bp Feature: gene Location: 9109-10575 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9730-10327 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9730-1032 7 bp Feature: gene Location: 10875-14219 bp Feature: domain Description: HEAT Location: 11064-11127 bp Feature: domain Description: HEAT Location: 11064-1112 7 bp Feature: domain Description: HEAT Location: 11265-11340 bp Feature: domain Description: HEAT Location: 112 65-11340 bp Feature: domain Description: HEAT Location: 12480-12531 bp Feature: domain Description: HEAT Location: 12 480-12 531 bp Feature: domain Description: HEAT Location: 12675-12738 bp Feature: domain Description: HEAT Location: 12 675-12 738 bp Feature: domain Description: Aldo_ket_red Location: 13062-13866 bp Feature: domain Description: Aldo_ket_red Location: 13062 -13866 bp Feature: gene Location: 14469-15800 bp Feature: domain Description: ACT_MalLac-Enz Location: 14499-14715 bp Feature: domain Description: ACT_MalLac-Enz Location: 14499-14715 bp Feature: domain Description: SfcA Location: 14718-15777 bp Feature: domain Description: SfcA Location: 14718-15777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEAT (sd00044), Aldo_ket_red (pfam00248), ACT_MalLac-Enz (cd04887), SfcA (COG0281), vWFA (cl00057), GATase1_like (pfam07090), vWA_subgroup (cd01465), SDR_c5 (cd05346), RVT-Retrons

Seq: MTCS02000083.1 Haliangium sp. UPWRP_2 85, whole genome shotgun sequence (7531 bp)
Overview 1 RT 1: 1630-7531 bp Neighborhood of RT #1 [1630, 7531] ParE_toxin PinE Recombinase Recombinase RVT-Retrons DDE_5 Feature: gene Location: 1630-1941 bp Feature: domain Description: ParE_toxin Location: 1639-1900 bp Feature: domain Description: ParE_toxin Location: 163 9-1900 bp Feature: gene Location: 1938-3131 bp Feature: domain Description: PinE Location: 2022-2556 bp Feature: domain Description: PinE Location: 2022-2556 bp Feature: domain Description: Recombinase Location: 2757-2883 bp Feature: domain Description: Recombinase Location: 2757-2883 bp Feature: domain Description: Recombinase Location: 2988-3093 bp Feature: domain Description: Recombinase Location: 2988-3 093 bp Feature: gene Location: 3362-4555 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3614-4283 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 614-4283 bp Feature: gene Location: 6334-7077 bp Feature: gene Location: 7132-7531 bp Feature: domain Description: DDE_5 Location: 7216-7531 bp Feature: domain Description: DDE_5 Location: 7216-753 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE_toxin (pfam05016), PinE (COG1961), Recombinase (pfam07508), RVT-Retrons, DDE_5 (pfam13546)