myRT

myRT report for GCA_002215035.1_ASM221503v1

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Seq: NKFP01000006.1 Leptolyngbya ohadii IS1 Scaffold_1, whole genome shotgun sequence (4260588 bp)
Overview 1 RT 1: 1480299-1484538 bp 2 RT 2: 1714697-1719736 bp 3 RT 3: 3423000-3428713 bp Neighborhood of RT #1 [1480299, 1484538] RVT_N RVT-GII GIIM HNH Neighborhood of RT #2 [1714697, 1719825] RelE RVT-GII GIIM HTH_XRE DDE_3 Neighborhood of RT #3 [3423000, 3428713] COG3293 COG3293 RVT-GII GIIM Feature: gene Location: 1480299-1480649 bp Feature: gene Location: 1480741-1480893 bp Feature: gene Location: 1481875-1483614 bp Feature: RT Description: RVT_N Location: 1481926-1482172 bp Feature: RT Description: RVT_N Location: 1 481 926-1 4821 72 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1482220-1482901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 482220-1 482901 bp Feature: domain Description: GIIM Note: maturase Location: 1482976-1483207 bp Feature: domain Description: GIIM Note: maturase Location: 1 482976-1 483207 bp Feature: domain Description: HNH Note: nucleases Location: 1483435-1483567 bp Feature: domain Description: HNH Note: nucleases Location: 1 483435-1 483567 bp Feature: gene Location: 1483972-1484157 bp Feature: gene Location: 1484197-1484538 bp Feature: gene Location: 1714697-1714873 bp Feature: domain Description: RelE Location: 1714706-1714838 bp Feature: domain Description: RelE Location: 1 71 4706-1 71 4838 bp Feature: gene Location: 1715031-1715270 bp Feature: gene Location: 1716201-1717535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1716477-1717098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 6477-1 71 7098 bp Feature: domain Description: GIIM Note: maturase Location: 1717137-1717347 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 71 37-1 71 7347 bp Feature: gene Location: 1717647-1717871 bp Feature: domain Description: HTH_XRE Location: 1717662-1717833 bp Feature: domain Description: HTH_XRE Location: 1 71 7662-1 71 7833 bp Feature: gene Location: 1719142-1719825 bp Feature: domain Description: DDE_3 Location: 1719202-1719736 bp Feature: domain Description: DDE_3 Location: 1 71 9202-1 71 9736 bp Feature: gene Location: 3423000-3423794 bp Feature: domain Description: COG3293 Location: 3423024-3423345 bp Feature: domain Description: COG3293 Location: 3423024-3423345 bp Feature: domain Description: COG3293 Location: 3423390-3423783 bp Feature: domain Description: COG3293 Location: 3423390-3423783 bp Feature: gene Location: 3423981-3424298 bp Feature: gene Location: 3424551-3425885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3424827-3425448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3424827-3425448 bp Feature: domain Description: GIIM Note: maturase Location: 3425487-3425697 bp Feature: domain Description: GIIM Note: maturase Location: 3425487-3425697 bp Feature: gene Location: 3426213-3427310 bp Feature: gene Location: 3428036-3428713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), RelE (pfam06296), HTH_XRE (smart00530), DDE_3 (pfam13358), COG3293 (Transposase )