myRT

myRT report for GCA_002217035.1_ASM221703v1

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Seq: MKFR01000023.1 Escherichia coli strain CoR-16 23_length_2398_cov_83.876984, whole genome shotgun sequence (2526 bp)
Overview 1 RT 1: 2-2063 bp Neighborhood of RT #1 [2, 2308] PHA02517 RVT-GII GIIM Feature: gene Location: 2-193 bp Feature: domain Description: PHA02517 Location: 5-128 bp Feature: domain Description: PHA0251 7 Location: 5-1 28 bp Feature: gene Location: 785-2308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1058-1790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 058-1 790 bp Feature: domain Description: GIIM Note: maturase Location: 1865-2063 bp Feature: domain Description: GIIM Note: maturase Location: 1 865-2063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: MKFR01000314.1 Escherichia coli strain CoR-16 376_length_5007_cov_41.512882, whole genome shotgun sequence (5135 bp)
Overview 1 RT 1: 633-4169 bp Neighborhood of RT #1 [633, 4210] PRK09678 RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 633-905 bp Feature: domain Description: PRK09678 Location: 642-798 bp Feature: domain Description: PRK09678 Location: 642 -798 bp Feature: gene Location: 1533-2519 bp Feature: gene Location: 2521-3453 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2623-3217 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 62 3-32 17 bp Feature: gene Location: 3479-3724 bp Feature: gene Location: 3908-4210 bp Feature: domain Description: Arm-DNA-bind_3 Location: 3917-4169 bp Feature: domain Description: Arm-DNA-bind_3 Location: 3917-4169 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, Arm-DNA-bind_3 (pfam13356)

Seq: MKFR01000316.1 Escherichia coli strain CoR-16 380_length_20783_cov_45.444931, whole genome shotgun sequence (20911 bp)
Overview 1 RT 1: 15374-20816 bp Neighborhood of RT #1 [15374, 20836] PBP2_CrgA_like_5 RVT-UG8 RVT-UG3 PRK09678 Psu Feature: gene Location: 15374-15784 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 15446-15758 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 15446-15758 bp Feature: gene Location: 15948-16103 bp Feature: gene Location: 16326-18344 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 16899-17352 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 16899-173 52 bp Feature: gene Location: 18335-19612 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 18623-19118 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 18623 -19118 bp Feature: gene Location: 20007-20279 bp Feature: domain Description: PRK09678 Location: 20016-20181 bp Feature: domain Description: PRK09678 Location: 20016-20181 bp Feature: gene Location: 20285-20836 bp Feature: domain Description: Psu Location: 20306-20816 bp Feature: domain Description: Psu Location: 203 06-20816 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_CrgA_like_5 (cd08474), RVT-UG8, RVT-UG3, PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455)

Seq: MKFR01000078.1 Escherichia coli strain CoR-16 73_length_2216_cov_129.538803, whole genome shotgun sequence (2344 bp)
Overview 1 RT 1: 83-2212 bp Neighborhood of RT #1 [83, 2212] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 83-1750 bp Feature: domain Description: RVT_N Location: 131-368 bp Feature: domain Description: RVT_N Location: 131-368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419-1061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 19-1061 bp Feature: domain Description: GIIM Note: maturase Location: 1112-1346 bp Feature: domain Description: GIIM Note: maturase Location: 1112-134 6 bp Feature: domain Description: HNHc Note: nucleases Location: 1556-1715 bp Feature: domain Description: HNHc Note: nucleases Location: 1556-1715 bp Feature: gene Location: 2030-2212 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)