myRT

myRT report for GCA_002217205.1_ASM221720v1

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Seq: MUGT01000002.1 Flavobacterium branchiophilum NBRC 15030 = ATCC 35035 WGS0042_contig_2, whole genome shotgun sequence (22818 bp)
Overview 1 RT 1: 18745-22414 bp Neighborhood of RT #1 [18745, 22425] TNT RVT-GII YigE Feature: gene Location: 18745-19500 bp Feature: domain Description: TNT Location: 19207-19492 bp Feature: domain Description: TNT Location: 1 9207-1 9492 bp Feature: gene Location: 19502-19897 bp Feature: gene Location: 20206-20676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20401-20677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20401 -20677 bp Feature: gene Location: 21712-22425 bp Feature: domain Description: YigE Location: 21772-22414 bp Feature: domain Description: YigE Location: 21 772-2241 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TNT (pfam14021), RVT-GII, YigE (COG3698)

Seq: MUGT01000047.1 Flavobacterium branchiophilum NBRC 15030 = ATCC 35035 WGS0042_contig_47, whole genome shotgun sequence (106869 bp)
Overview 1 RT 1: 3679-7405 bp 2 RT 2: 14363-19423 bp Neighborhood of RT #1 [3679, 7500] smpB VF530 RVT-Retrons DnaB DUF3127 Neighborhood of RT #2 [14363, 19423] RVT-Retrons WYL Feature: gene Location: 3679-4134 bp Feature: domain Description: smpB Location: 3697-4123 bp Feature: domain Description: smpB Location: 3697-412 3 bp Feature: gene Location: 4238-4465 bp Feature: domain Description: VF530 Location: 4259-4442 bp Feature: domain Description: VF530 Location: 42 59-4442 bp Feature: gene Location: 4497-5804 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4899-5487 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4899-5487 bp Feature: gene Location: 5838-6887 bp Feature: domain Description: DnaB Location: 5865-6762 bp Feature: domain Description: DnaB Location: 5865-6762 bp Feature: gene Location: 7150-7500 bp Feature: domain Description: DUF3127 Location: 7159-7405 bp Feature: domain Description: DUF312 7 Location: 7159-7405 bp Feature: gene Location: 14363-15061 bp Feature: gene Location: 15063-16163 bp Feature: gene Location: 16188-17492 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16410-17076 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16410-17076 bp Feature: gene Location: 17889-18908 bp Feature: domain Description: WYL Location: 18363-18885 bp Feature: domain Description: WYL Location: 18363-18885 bp Feature: gene Location: 18986-19423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT smpB (TIGR00086), VF530 (pfam09905), RVT-Retrons, DnaB (TIGR00665), DUF3127 (pfam11325), WYL (pfam13280)

Seq: MUGT01000027.1 Flavobacterium branchiophilum NBRC 15030 = ATCC 35035 WGS0042_contig_27, whole genome shotgun sequence (119721 bp)
Overview 1 RT 1: 89280-99748 bp Neighborhood of RT #1 [89280, 99748] addB_alphas PRK14875 RVT-Retrons WGR_DNA_ligase Feature: gene Location: 89280-92039 bp Feature: domain Description: addB_alphas Location: 90675-91734 bp Feature: domain Description: addB_alphas Location: 90675-9173 4 bp Feature: gene Location: 92036-92818 bp Feature: domain Description: PRK14875 Location: 92060-92807 bp Feature: domain Description: PRK14875 Location: 92060-92807 bp Feature: gene Location: 93249-94760 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 93783-94401 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 93 783 -94401 bp Feature: gene Location: 94696-98097 bp Feature: domain Description: WGR_DNA_ligase Location: 94786-95005 bp Feature: domain Description: WGR_DNA_ligase Location: 94786-95005 bp Feature: gene Location: 98102-99748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT addB_alphas (TIGR02786), PRK14875 (acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional), RVT-Retrons, WGR_DNA_ligase (cd07998)