myRT

myRT report for GCA_002218065.1_ASM221806v1

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Seq: BDUB01000001.1 Nodularia sp. NIES-3585 DNA, scaffold: scaffold1, whole genome shotgun sequence (5482519 bp)
Overview 1 RT 1: 1170201-1173868 bp 2 RT 2: 2415188-2421211 bp 3 RT 3: 3403489-3417098 bp 4 RT 4: 4089417-4097952 bp 5 RT 5: 4256869-4263455 bp Neighborhood of RT #1 [1170201, 1173868] YafQ RVT-Retrons Neighborhood of RT #2 [2415188, 2421231] PRK08074 DinG DinG RVT_N RVT-GII McrA DUF1815 FadM Neighborhood of RT #3 [3403489, 3417098] PRK13560 PAC GAF PRK13560 RNR_II_monomer RVT_N RVT-GII GIIM McrA RVT_N RVT-GII GIIM McrA RTPR HintN LAGLIDADG_3 LAGLIDADG_3 RTPR Hop Hop Hop RTPR Neighborhood of RT #4 [4089417, 4097954] UPF0242 KOG0157 RVT_N RVT-GII psaB psaA Neighborhood of RT #5 [4256869, 4263481] RecN AarF RVT-DGRs Avd_like TIR_2 YfmG Feature: gene Location: 1170201-1170485 bp Feature: domain Description: YafQ Location: 1170213-1170483 bp Feature: domain Description: YafQ Location: 1 1 7021 3-1 1 70483 bp Feature: gene Location: 1170555-1171562 bp Feature: gene Location: 1171564-1172712 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1171768-1172383 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 71 768-1 1 72383 bp Feature: gene Location: 1173239-1173472 bp Feature: gene Location: 1173593-1173868 bp Feature: gene Location: 2415188-2416726 bp Feature: domain Description: PRK08074 Location: 2415266-2415470 bp Feature: domain Description: PRK08074 Location: 241 5266-241 5470 bp Feature: domain Description: DinG Location: 2415557-2415863 bp Feature: domain Description: DinG Location: 241 5557-241 5863 bp Feature: domain Description: DinG Location: 2415899-2416712 bp Feature: domain Description: DinG Location: 241 5899-241 671 2 bp Feature: gene Location: 2416954-2417205 bp Feature: gene Location: 2417415-2418989 bp Feature: RT Description: RVT_N Location: 2417451-2417691 bp Feature: RT Description: RVT_N Location: 241 7451 -241 7691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2417748-2418405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 7748-241 8405 bp Feature: domain Description: McrA Location: 2418636-2418966 bp Feature: domain Description: McrA Location: 241 8636-241 8966 bp Feature: gene Location: 2420137-2420481 bp Feature: domain Description: DUF1815 Location: 2420143-2420440 bp Feature: domain Description: DUF1 81 5 Location: 24201 43-2420440 bp Feature: gene Location: 2420731-2421231 bp Feature: domain Description: FadM Location: 2420815-2421211 bp Feature: domain Description: FadM Location: 242081 5-2421 21 1 bp Feature: gene Location: 3403489-3405429 bp Feature: domain Description: PRK13560 Location: 3403537-3403987 bp Feature: domain Description: PRK1 3560 Location: 3403537-3403987 bp Feature: domain Description: PAC Location: 3404080-3404197 bp Feature: domain Description: PAC Location: 3404080-34041 97 bp Feature: domain Description: GAF Location: 3404284-3404728 bp Feature: domain Description: GAF Location: 3404284-3404728 bp Feature: domain Description: PRK13560 Location: 3404746-3405409 bp Feature: domain Description: PRK1 3560 Location: 3404746-3405409 bp Feature: gene Location: 3406041-3406304 bp Feature: domain Description: RNR_II_monomer Location: 3406104-3406299 bp Feature: domain Description: RNR_II_monomer Location: 34061 04-3406299 bp Feature: gene Location: 3406997-3408766 bp Feature: RT Description: RVT_N Location: 3407009-3407255 bp Feature: RT Description: RVT_N Location: 3407009-3407255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3407297-3407969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3407297-3407969 bp Feature: domain Description: GIIM Note: maturase Location: 3408068-3408305 bp Feature: domain Description: GIIM Note: maturase Location: 3408068-3408305 bp Feature: domain Description: McrA Location: 3408383-3408668 bp Feature: domain Description: McrA Location: 3408383-3408668 bp Feature: gene Location: 3409551-3411380 bp Feature: RT Description: RVT_N Location: 3409593-3409839 bp Feature: RT Description: RVT_N Location: 3409593-3409839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3409881-3410565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3409881 -341 0565 bp Feature: domain Description: GIIM Note: maturase Location: 3410670-3410901 bp Feature: domain Description: GIIM Note: maturase Location: 341 0670-341 0901 bp Feature: domain Description: McrA Location: 3410994-3411267 bp Feature: domain Description: McrA Location: 341 0994-341 1 267 bp Feature: gene Location: 3411453-3416612 bp Feature: domain Description: RTPR Location: 3411471-3411843 bp Feature: domain Description: RTPR Location: 341 1 471 -341 1 843 bp Feature: domain Description: HintN Location: 3411843-3412104 bp Feature: domain Description: HintN Location: 341 1 843-341 21 04 bp Feature: domain Description: LAGLIDADG_3 Location: 3412224-3412413 bp Feature: domain Description: LAGLIDADG_3 Location: 341 2224-341 241 3 bp Feature: domain Description: LAGLIDADG_3 Location: 3412542-3412725 bp Feature: domain Description: LAGLIDADG_3 Location: 341 2542-341 2725 bp Feature: domain Description: RTPR Location: 3413064-3413463 bp Feature: domain Description: RTPR Location: 341 3064-341 3463 bp Feature: domain Description: Hop Location: 3413550-3414564 bp Feature: domain Description: Hop Location: 341 3550-341 4564 bp Feature: domain Description: Hop Location: 3414723-3414846 bp Feature: domain Description: Hop Location: 341 4723-341 4846 bp Feature: domain Description: Hop Location: 3415173-3415308 bp Feature: domain Description: Hop Location: 341 51 73-341 5308 bp Feature: domain Description: RTPR Location: 3415563-3416589 bp Feature: domain Description: RTPR Location: 341 5563-341 6589 bp Feature: gene Location: 3416883-3417098 bp Feature: gene Location: 4089417-4090199 bp Feature: domain Description: UPF0242 Location: 4089735-4090110 bp Feature: domain Description: UPF0242 Location: 4089735-40901 1 0 bp Feature: gene Location: 4090208-4091539 bp Feature: domain Description: KOG0157 Location: 4090229-4091537 bp Feature: domain Description: KOG01 57 Location: 4090229-4091 537 bp Feature: gene Location: 4091968-4092543 bp Feature: RT Description: RVT_N Location: 4092004-4092250 bp Feature: RT Description: RVT_N Location: 4092004-4092250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4092292-4092481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4092292-4092481 bp Feature: gene Location: 4093333-4095564 bp Feature: domain Description: psaB Location: 4093339-4095562 bp Feature: domain Description: psaB Location: 4093339-4095562 bp Feature: gene Location: 4095696-4097954 bp Feature: domain Description: psaA Location: 4095699-4097952 bp Feature: domain Description: psaA Location: 4095699-4097952 bp Feature: gene Location: 4256869-4258596 bp Feature: domain Description: RecN Location: 4256872-4258573 bp Feature: domain Description: RecN Location: 4256872-4258573 bp Feature: gene Location: 4258870-4260948 bp Feature: domain Description: AarF Location: 4259080-4260574 bp Feature: domain Description: AarF Location: 4259080-4260574 bp Feature: gene Location: 4261221-4261619 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4261425-4261602 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4261 425-4261 602 bp Feature: gene Location: 4261620-4261976 bp Feature: domain Description: Avd_like Location: 4261638-4261944 bp Feature: domain Description: Avd_like Location: 4261 638-4261 944 bp Feature: gene Location: 4262144-4263481 bp Feature: domain Description: TIR_2 Location: 4262171-4262570 bp Feature: domain Description: TIR_2 Location: 42621 71 -4262570 bp Feature: domain Description: YfmG Location: 4262645-4263455 bp Feature: domain Description: YfmG Location: 4262645-4263455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YafQ (COG3041), RVT-Retrons, PRK08074 (bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated), DinG (COG1199), RVT_N (pfam13655), RVT-GII, McrA (COG4058), DUF1815 (pfam08844), FadM (COG0824), PRK13560 (hypothetical protein; Provisional)
PAC (smart00086), GAF (smart00065), RNR_II_monomer (cd01676), GIIM (pfam08388), RTPR (TIGR02505), HintN (smart00306), LAGLIDADG_3 (pfam14528), Hop (COG1372), UPF0242 (pfam06785), KOG0157 (KOG0157, Cytochrome P450 CYP4/CYP19/CYP26 subfamilies )
psaB (TIGR01336), psaA (TIGR01335), RecN (COG0497), AarF (COG0661), RVT-DGRs, Avd_like (cd16376), TIR_2 (pfam13676), YfmG (COG1262)