myRT

myRT report for GCA_002218085.1_ASM221808v1

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Seq: BDUC01000002.1 Tolypothrix sp. NIES-4075 DNA, scaffold: sequence02, whole genome shotgun sequence (1342536 bp)
Overview 1 RT 1: 1199655-1208531 bp Neighborhood of RT #1 [1199655, 1208531] GT28_MurG COG4671 GT28_MurG FtsW RVT_N RVT-GII RVT-GII Intron_maturas2 HNHc RVT-GII GIIM McrA TPR_12 TPR_12 TPR Feature: gene Location: 1199655-1200647 bp Ori: GAX41318.1 Feature: domain Description: GT28_MurG Location: 1199682-1199760 bp Feature: domain Description: GT28_MurG Location: 1 1 99682-1 1 99760 bp Feature: domain Description: COG4671 Location: 1199862-1199991 bp Feature: domain Description: COG4671 Location: 1 1 99862-1 1 99991 bp Feature: domain Description: GT28_MurG Location: 1200369-1200504 bp Feature: domain Description: GT28_MurG Location: 1 200369-1 200504 bp Feature: gene Location: 1200699-1202012 bp Ori: GAX41319.1 Feature: domain Description: FtsW Location: 1200873-1201938 bp Feature: domain Description: FtsW Location: 1 200873-1 201 938 bp Feature: gene Location: 1202779-1203351 bp Ori: GAX41320.1 Feature: domain Description: RVT_N Location: 1202818-1203064 bp Feature: domain Description: RVT_N Location: 1 20281 8-1 203064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1203106-1203337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2031 06-1 203337 bp Feature: gene Location: 1203842-1205626 bp Ori: GAX41321.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1204103-1204898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2041 03-1 204898 bp Feature: domain Description: Intron_maturas2 Location: 1205000-1205243 bp Feature: domain Description: Intron_maturas2 Location: 1 205000-1 205243 bp Feature: domain Description: HNHc Note: nucleases Location: 1205423-1205582 bp Feature: domain Description: HNHc Note: nucleases Location: 1 205423-1 205582 bp Feature: gene Location: 1205827-1206888 bp Ori: GAX41322.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1205830-1206190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 205830-1 2061 90 bp Feature: domain Description: GIIM Note: maturase Location: 1206289-1206523 bp Feature: domain Description: GIIM Note: maturase Location: 1 206289-1 206523 bp Feature: domain Description: McrA Location: 1206613-1206880 bp Feature: domain Description: McrA Location: 1 20661 3-1 206880 bp Feature: gene Location: 1207038-1207994 bp Ori: GAX41323.1 Feature: domain Description: TPR_12 Location: 1207062-1207275 bp Feature: domain Description: TPR_1 2 Location: 1 207062-1 207275 bp Feature: domain Description: TPR_12 Location: 1207302-1207515 bp Feature: domain Description: TPR_1 2 Location: 1 207302-1 20751 5 bp Feature: domain Description: TPR Location: 1207545-1207629 bp Feature: domain Description: TPR Location: 1 207545-1 207629 bp Feature: gene Location: 1208211-1208531 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT28_MurG (cd03785), COG4671 (Predicted glycosyl transferase ), FtsW (COG0772), RVT_N (pfam13655), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), GIIM (pfam08388), McrA (COG4058), TPR_12 (pfam13424)
TPR (smart00028)

Seq: BDUC01000011.1 Tolypothrix sp. NIES-4075 DNA, scaffold: sequence11, whole genome shotgun sequence (149249 bp)
Overview 1 RT 1: 114797-126562 bp Neighborhood of RT #1 [114797, 126594] YadD RVT-CRISPR cas1 DUF4384 TPR_12 TPR_10 TPR_12 TPR_12 TPR_10 TPR_12 TPR_12 TPR_12 CHAT Feature: gene Location: 114797-115618 bp Ori: GAX45323.1 Feature: domain Description: YadD Location: 114806-115610 bp Feature: domain Description: YadD Location: 114806-115610 bp Feature: gene Location: 116993-117151 bp Feature: gene Location: 117392-119401 bp Ori: GAX45325.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 117581-118190 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 117581-118190 bp Feature: domain Description: cas1 Location: 118406-119375 bp Feature: domain Description: cas1 Location: 118406-119375 bp Feature: gene Location: 120062-120814 bp Ori: GAX45326.1 Feature: domain Description: DUF4384 Location: 120437-120668 bp Feature: domain Description: DUF4384 Location: 12 0437-12 0668 bp Feature: gene Location: 122791-126594 bp Ori: GAX45327.1 Feature: domain Description: TPR_12 Location: 122851-123031 bp Feature: domain Description: TPR_12 Location: 12 2 851-12 3031 bp Feature: domain Description: TPR_10 Location: 123058-123175 bp Feature: domain Description: TPR_10 Location: 12 3058-12 3175 bp Feature: domain Description: TPR_12 Location: 123184-123409 bp Feature: domain Description: TPR_12 Location: 12 3184-12 3409 bp Feature: domain Description: TPR_12 Location: 123436-123655 bp Feature: domain Description: TPR_12 Location: 12 3436-12 3655 bp Feature: domain Description: TPR_10 Location: 123688-123811 bp Feature: domain Description: TPR_10 Location: 12 3688-12 3811 bp Feature: domain Description: TPR_12 Location: 123814-124036 bp Feature: domain Description: TPR_12 Location: 12 3814-12 4036 bp Feature: domain Description: TPR_12 Location: 124069-124288 bp Feature: domain Description: TPR_12 Location: 12 4069-12 42 88 bp Feature: domain Description: TPR_12 Location: 124315-124528 bp Feature: domain Description: TPR_12 Location: 12 4315-12 452 8 bp Feature: domain Description: CHAT Location: 125401-126562 bp Feature: domain Description: CHAT Location: 12 5401-12 6562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YadD (COG5464), RVT-CRISPR, cas1 (TIGR00287), DUF4384 (pfam14326), TPR_12 (pfam13424), TPR_10 (pfam13374), CHAT (pfam12770)

Seq: BDUC01000022.1 Tolypothrix sp. NIES-4075 DNA, scaffold: sequence22, whole genome shotgun sequence (45242 bp)
Overview 1 RT 1: 20019-22437 bp 2 RT 2: 29739-34418 bp Neighborhood of RT #1 [20019, 22463] RVT-GII McrA Neighborhood of RT #2 [29739, 34418] RVT-GII Intron_maturas2 HNHc RVT-GII GIIM McrA Feature: gene Location: 20019-20288 bp Feature: gene Location: 20725-21273 bp Feature: gene Location: 21489-22463 bp Ori: GAX45900.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21513-21882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21513 -21882 bp Feature: domain Description: McrA Location: 22119-22437 bp Feature: domain Description: McrA Location: 22119-2243 7 bp Feature: gene Location: 29739-31523 bp Ori: GAX45903.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30000-30795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 0000-3 0795 bp Feature: domain Description: Intron_maturas2 Location: 30897-31140 bp Feature: domain Description: Intron_maturas2 Location: 3 0897-3 1140 bp Feature: domain Description: HNHc Note: nucleases Location: 31320-31479 bp Feature: domain Description: HNHc Note: nucleases Location: 3 13 20-3 1479 bp Feature: gene Location: 31661-32575 bp Ori: GAX45904.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31667-31991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 1667-3 1991 bp Feature: domain Description: GIIM Note: maturase Location: 32048-32237 bp Feature: domain Description: GIIM Note: maturase Location: 3 2048-3 223 7 bp Feature: domain Description: McrA Location: 32246-32546 bp Feature: domain Description: McrA Location: 3 2246-3 2546 bp Feature: gene Location: 32886-33545 bp Feature: gene Location: 33732-34418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, McrA (COG4058), Intron_maturas2 (pfam01348), HNHc (smart00507), GIIM (pfam08388)

Seq: BDUC01000007.1 Tolypothrix sp. NIES-4075 DNA, scaffold: sequence07, whole genome shotgun sequence (82904 bp)
Overview 1 RT 1: 25614-33701 bp Neighborhood of RT #1 [25614, 33701] Glyoxalase ECM4 RVT-GII GIIM McrA RVT-GII Intron_maturas2 HNHc RVT_N RVT-GII Ribonuclease Feature: gene Location: 25614-26012 bp Ori: GAX44272.1 Feature: domain Description: Glyoxalase Location: 25632-25995 bp Feature: domain Description: Glyoxalase Location: 25632-25995 bp Feature: gene Location: 26099-27070 bp Ori: GAX44273.1 Feature: domain Description: ECM4 Location: 26114-27056 bp Feature: domain Description: ECM4 Location: 26114 -27056 bp Feature: gene Location: 27696-28610 bp Ori: GAX44274.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27702-28026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27702-28026 bp Feature: domain Description: GIIM Note: maturase Location: 28083-28272 bp Feature: domain Description: GIIM Note: maturase Location: 28083-28272 bp Feature: domain Description: McrA Location: 28281-28581 bp Feature: domain Description: McrA Location: 28281-28581 bp Feature: gene Location: 28748-30532 bp Ori: GAX44275.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29009-29804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29009-29804 bp Feature: domain Description: Intron_maturas2 Location: 29906-30149 bp Feature: domain Description: Intron_maturas2 Location: 29906-3014 9 bp Feature: domain Description: HNHc Note: nucleases Location: 30329-30488 bp Feature: domain Description: HNHc Note: nucleases Location: 30329-304 88 bp Feature: gene Location: 31023-31520 bp Ori: GAX44276.1 Feature: domain Description: RVT_N Location: 31029-31203 bp Feature: domain Description: RVT_N Location: 31029-31203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31266-31506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31266-31506 bp Feature: gene Location: 32382-32765 bp Ori: GAX44277.1 Feature: domain Description: Ribonuclease Location: 32493-32757 bp Feature: domain Description: Ribonuclease Location: 324 93-32757 bp Feature: gene Location: 33408-33701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyoxalase (pfam00903), ECM4 (COG0435), RVT-GII, GIIM (pfam08388), McrA (COG4058), Intron_maturas2 (pfam01348), HNHc (smart00507), RVT_N (pfam13655), Ribonuclease (pfam00545)

Seq: BDUC01000010.1 Tolypothrix sp. NIES-4075 DNA, scaffold: sequence10, whole genome shotgun sequence (293576 bp)
Overview 1 RT 1: 106078-112986 bp Neighborhood of RT #1 [106078, 113012] FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP RVT-Retrons SWIM Feature: gene Location: 106078-107271 bp Ori: GAX45063.1 Feature: domain Description: FG-GAP Location: 106255-106345 bp Feature: domain Description: FG-GAP Location: 10625 5 -106345 bp Feature: domain Description: FG-GAP Location: 106420-106456 bp Feature: domain Description: FG-GAP Location: 106420-10645 6 bp Feature: domain Description: FG-GAP Location: 106555-106639 bp Feature: domain Description: FG-GAP Location: 1065 5 5 -106639 bp Feature: domain Description: FG-GAP Location: 106699-106780 bp Feature: domain Description: FG-GAP Location: 106699-106780 bp Feature: domain Description: FG-GAP Location: 106831-106918 bp Feature: domain Description: FG-GAP Location: 106831-106918 bp Feature: domain Description: FG-GAP Location: 106972-107026 bp Feature: domain Description: FG-GAP Location: 106972-107026 bp Feature: domain Description: FG-GAP Location: 107122-107203 bp Feature: domain Description: FG-GAP Location: 107122-107203 bp Feature: gene Location: 107784-108959 bp Ori: GAX45064.1 Feature: domain Description: FG-GAP Location: 107964-107994 bp Feature: domain Description: FG-GAP Location: 107964-107994 bp Feature: domain Description: FG-GAP Location: 108111-108156 bp Feature: domain Description: FG-GAP Location: 108111-10815 6 bp Feature: domain Description: FG-GAP Location: 108240-108330 bp Feature: domain Description: FG-GAP Location: 108240-108330 bp Feature: domain Description: FG-GAP Location: 108384-108471 bp Feature: domain Description: FG-GAP Location: 108384-108471 bp Feature: domain Description: FG-GAP Location: 108537-108609 bp Feature: domain Description: FG-GAP Location: 1085 37-108609 bp Feature: domain Description: FG-GAP Location: 108666-108753 bp Feature: domain Description: FG-GAP Location: 108666-10875 3 bp Feature: domain Description: FG-GAP Location: 108807-108894 bp Feature: domain Description: FG-GAP Location: 108807-108894 bp Feature: gene Location: 108967-110382 bp Ori: GAX45065.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 109516-110131 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1095 16-110131 bp Feature: gene Location: 110744-111004 bp Feature: gene Location: 111267-113012 bp Ori: GAX45067.1 Feature: domain Description: SWIM Location: 112896-112986 bp Feature: domain Description: SWIM Location: 112896-112986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FG-GAP (pfam01839), RVT-Retrons, SWIM (pfam04434)

Seq: BDUC01000001.1 Tolypothrix sp. NIES-4075 DNA, scaffold: sequence01, whole genome shotgun sequence (1439827 bp)
Overview 1 RT 1: 132917-140560 bp 2 RT 2: 1165708-1176067 bp Neighborhood of RT #1 [132917, 140592] PLN02653 GDP_FS_SDR_e RVT_N RVT-GII RVT-GII Intron_maturas2 HNHc RVT-GII GIIM McrA NikR Unstab_antitox Neighborhood of RT #2 [1165708, 1176081] metH RVT-GII GIIM McrA RVT-GII Intron_maturas2 HNHc RVT_N RVT-GII PGRP Uma2 Feature: gene Location: 132917-133996 bp Ori: GAX39167.1 Feature: domain Description: PLN02653 Location: 132923-133907 bp Feature: domain Description: PLN026 53 Location: 132923-133907 bp Feature: gene Location: 134022-134966 bp Ori: GAX39168.1 Feature: domain Description: GDP_FS_SDR_e Location: 134052-134949 bp Feature: domain Description: GDP_FS_SDR_e Location: 134052-134949 bp Feature: gene Location: 136011-136508 bp Ori: GAX39169.1 Feature: domain Description: RVT_N Location: 136017-136191 bp Feature: domain Description: RVT_N Location: 136 017-136 191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136254-136494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136 254-136 494 bp Feature: gene Location: 136999-138783 bp Ori: GAX39170.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137260-138055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13726 0-138055 bp Feature: domain Description: Intron_maturas2 Location: 138157-138400 bp Feature: domain Description: Intron_maturas2 Location: 138157-138400 bp Feature: domain Description: HNHc Note: nucleases Location: 138580-138739 bp Feature: domain Description: HNHc Note: nucleases Location: 138580-138739 bp Feature: gene Location: 138921-139835 bp Ori: GAX39171.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138927-139251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138927-139251 bp Feature: domain Description: GIIM Note: maturase Location: 139308-139497 bp Feature: domain Description: GIIM Note: maturase Location: 139308-139497 bp Feature: domain Description: McrA Location: 139506-139806 bp Feature: domain Description: McrA Location: 139506 -139806 bp Feature: gene Location: 140030-140272 bp Ori: GAX39172.1 Feature: domain Description: NikR Location: 140039-140252 bp Feature: domain Description: NikR Location: 140039-140252 bp Feature: gene Location: 140362-140592 bp Ori: GAX39173.1 Feature: domain Description: Unstab_antitox Location: 140401-140560 bp Feature: domain Description: Unstab_antitox Location: 140401-14056 0 bp Feature: gene Location: 1165708-1165875 bp Feature: gene Location: 1166056-1169577 bp Ori: GAX40072.1 Feature: domain Description: metH Location: 1166095-1169572 bp Feature: domain Description: metH Location: 116 6 095-116 9572 bp Feature: gene Location: 1170046-1171026 bp Ori: GAX40073.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1170052-1170439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1170052-1170439 bp Feature: domain Description: GIIM Note: maturase Location: 1170496-1170667 bp Feature: domain Description: GIIM Note: maturase Location: 1170496 -11706 6 7 bp Feature: domain Description: McrA Location: 1170691-1170997 bp Feature: domain Description: McrA Location: 11706 91-1170997 bp Feature: gene Location: 1171164-1172948 bp Ori: GAX40074.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1171425-1172220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1171425-1172220 bp Feature: domain Description: Intron_maturas2 Location: 1172322-1172565 bp Feature: domain Description: Intron_maturas2 Location: 1172322-117256 5 bp Feature: domain Description: HNHc Note: nucleases Location: 1172745-1172904 bp Feature: domain Description: HNHc Note: nucleases Location: 1172745-1172904 bp Feature: gene Location: 1173439-1174026 bp Ori: GAX40075.1 Feature: domain Description: RVT_N Location: 1173475-1173715 bp Feature: domain Description: RVT_N Location: 1173475-1173715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1173772-1174012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1173772-1174012 bp Feature: gene Location: 1174600-1175403 bp Ori: GAX40076.1 Feature: domain Description: PGRP Location: 1174921-1175344 bp Feature: domain Description: PGRP Location: 1174921-1175344 bp Feature: gene Location: 1175503-1176081 bp Ori: GAX40077.1 Feature: domain Description: Uma2 Location: 1175539-1176067 bp Feature: domain Description: Uma2 Location: 1175539-1176 06 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLN02653 (GDP-mannose 4,6-dehydratase), GDP_FS_SDR_e (cd05239), RVT_N (pfam13655), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), GIIM (pfam08388), McrA (COG4058), NikR (COG0864), Unstab_antitox (pfam09720)
metH (TIGR02082), PGRP (smart00701), Uma2 (pfam05685)

Seq: BDUC01000009.1 Tolypothrix sp. NIES-4075 DNA, scaffold: sequence09, whole genome shotgun sequence (296622 bp)
Overview 1 RT 1: 17133-23206 bp Neighborhood of RT #1 [17133, 23214] BCCP PRK00529 RVT_N RVT-GII GIIM HNHc cyclophilin_TLP40_like PRK05731 Feature: gene Location: 17133-17717 bp Ori: GAX44735.1 Feature: domain Description: BCCP Location: 17199-17706 bp Feature: domain Description: BCCP Location: 17 199-17 7 06 bp Feature: gene Location: 17767-18324 bp Ori: GAX44736.1 Feature: domain Description: PRK00529 Location: 17770-18319 bp Feature: domain Description: PRK00529 Location: 17 7 7 0-18319 bp Feature: gene Location: 18456-20099 bp Ori: GAX44737.1 Feature: domain Description: RVT_N Location: 18486-18726 bp Feature: domain Description: RVT_N Location: 18486-187 26 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18780-19419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187 80-19419 bp Feature: domain Description: GIIM Note: maturase Location: 19491-19725 bp Feature: domain Description: GIIM Note: maturase Location: 19491-197 25 bp Feature: domain Description: HNHc Note: nucleases Location: 19929-20088 bp Feature: domain Description: HNHc Note: nucleases Location: 19929-20088 bp Feature: gene Location: 20975-22081 bp Ori: GAX44738.1 Feature: domain Description: cyclophilin_TLP40_like Location: 21527-22049 bp Feature: domain Description: cyclophilin_TLP40_like Location: 21527 -22049 bp Feature: gene Location: 22159-23214 bp Ori: GAX44739.1 Feature: domain Description: PRK05731 Location: 22174-23206 bp Feature: domain Description: PRK057 31 Location: 2217 4-23206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BCCP (TIGR00531), PRK00529 (elongation factor P; Validated), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), cyclophilin_TLP40_like (cd01924), PRK05731 (thiamine monophosphate kinase; Provisional)

Seq: BDUC01000062.1 Tolypothrix sp. NIES-4075 DNA, scaffold: sequence62, whole genome shotgun sequence (2416 bp)
Overview 1 RT 1: 517-2257 bp Neighborhood of RT #1 [517, 2301] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 517-2301 bp Ori: GAX46411.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 778-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 778 -1573 bp Feature: domain Description: Intron_maturas2 Location: 1675-1918 bp Feature: domain Description: Intron_maturas2 Location: 1675-1918 bp Feature: domain Description: HNHc Note: nucleases Location: 2098-2257 bp Feature: domain Description: HNHc Note: nucleases Location: 2098 -2257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: BDUC01000003.1 Tolypothrix sp. NIES-4075 DNA, scaffold: sequence03, whole genome shotgun sequence (1103949 bp)
Overview 1 RT 1: 80677-84125 bp 2 RT 2: 552789-562063 bp 3 RT 3: 993386-1004069 bp Neighborhood of RT #1 [80677, 84166] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR SpoT Neighborhood of RT #2 [552789, 562071] GT4_AviGT4-like DICT BaeS RVT_N RVT-GII RVT-GII Intron_maturas2 HNHc RVT-GII RVT-GII McrA PsaD Neighborhood of RT #3 [993386, 1004069] psaB GalK RVT-GII GIIM McrA RVT-GII Intron_maturas2 HNHc RVT_N RVT-GII InsQ RVT_N RVT-GII GIIM McrA YflT Feature: gene Location: 80677-80952 bp Ori: GAX41515.1 Feature: domain Description: Cas2_I_II_III Location: 80686-80917 bp Feature: domain Description: Cas2_I_II_III Location: 80686-809 17 bp Feature: gene Location: 81149-82315 bp Ori: GAX41516.1 Feature: domain Description: Cas1_I-II-III Location: 81323-82277 bp Feature: domain Description: Cas1_I-II-III Location: 81323-82277 bp Feature: gene Location: 82348-83298 bp Ori: GAX41517.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 82555-83161 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 82555-83161 bp Feature: gene Location: 83340-83570 bp Feature: gene Location: 83579-84166 bp Ori: GAX41519.1 Feature: domain Description: SpoT Location: 83594-84125 bp Feature: domain Description: SpoT Location: 8359 4-84125 bp Feature: gene Location: 552789-553811 bp Ori: GAX42000.1 Feature: domain Description: GT4_AviGT4-like Location: 552795-553803 bp Feature: domain Description: GT4_AviGT4-like Location: 55279 5-553803 bp Feature: gene Location: 554900-556936 bp Ori: GAX42001.1 Feature: domain Description: DICT Location: 554903-555671 bp Feature: domain Description: DICT Location: 5549 03-555671 bp Feature: domain Description: BaeS Location: 556010-556907 bp Feature: domain Description: BaeS Location: 556010-5569 07 bp Feature: gene Location: 557485-558072 bp Ori: GAX42002.1 Feature: domain Description: RVT_N Location: 557521-557758 bp Feature: domain Description: RVT_N Location: 557521-557758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 557818-558058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 557818-558058 bp Feature: gene Location: 558563-560347 bp Ori: GAX42003.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 558824-559619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 558824-559 619 bp Feature: domain Description: Intron_maturas2 Location: 559721-559964 bp Feature: domain Description: Intron_maturas2 Location: 559 721-559 9 64 bp Feature: domain Description: HNHc Note: nucleases Location: 560144-560303 bp Feature: domain Description: HNHc Note: nucleases Location: 560144-560303 bp Feature: gene Location: 560485-561399 bp Ori: GAX42004.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 560497-560647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56049 7-560647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 560647-560815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 560647-560815 bp Feature: domain Description: McrA Location: 561049-561370 bp Feature: domain Description: McrA Location: 561049 -561370 bp Feature: gene Location: 561343-561462 bp Feature: gene Location: 561652-562071 bp Ori: GAX42006.1 Feature: domain Description: PsaD Location: 561670-562063 bp Feature: domain Description: PsaD Location: 561670-562063 bp Feature: gene Location: 993386-993694 bp Ori: GAX42365.1 Feature: domain Description: psaB Location: 993389-993692 bp Feature: domain Description: psaB Location: 9 9 3389 -9 9 369 2 bp Feature: gene Location: 993861-994937 bp Ori: GAX42366.1 Feature: domain Description: GalK Location: 993870-994896 bp Feature: domain Description: GalK Location: 9 9 3870-9 9 489 6 bp Feature: gene Location: 995107-996087 bp Ori: GAX42367.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 995113-995500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9 9 5113-9 9 5500 bp Feature: domain Description: GIIM Note: maturase Location: 995557-995728 bp Feature: domain Description: GIIM Note: maturase Location: 9 9 5557-9 9 5728 bp Feature: domain Description: McrA Location: 995752-996058 bp Feature: domain Description: McrA Location: 9 9 5752-9 9 6058 bp Feature: gene Location: 996225-998009 bp Ori: GAX42368.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 996486-997281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9 9 6486-9 9 7281 bp Feature: domain Description: Intron_maturas2 Location: 997383-997626 bp Feature: domain Description: Intron_maturas2 Location: 9 9 7383-9 9 7626 bp Feature: domain Description: HNHc Note: nucleases Location: 997806-997965 bp Feature: domain Description: HNHc Note: nucleases Location: 9 9 7806-9 9 79 65 bp Feature: gene Location: 998500-999087 bp Ori: GAX42369.1 Feature: domain Description: RVT_N Location: 998536-998776 bp Feature: domain Description: RVT_N Location: 9 9 8536-9 9 8776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998833-999073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9 9 8833-9 9 9 073 bp Feature: gene Location: 999619-1000761 bp Ori: GAX42370.1 Feature: domain Description: InsQ Location: 999766-1000741 bp Feature: domain Description: InsQ Location: 9 9 9 766-1000741 bp Feature: gene Location: 1000754-1002550 bp Ori: GAX42371.1 Feature: domain Description: RVT_N Location: 1000793-1001039 bp Feature: domain Description: RVT_N Location: 100079 3-1001039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1001081-1001753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1001081-1001753 bp Feature: domain Description: GIIM Note: maturase Location: 1001858-1002086 bp Feature: domain Description: GIIM Note: maturase Location: 1001858-1002086 bp Feature: domain Description: McrA Location: 1002176-1002452 bp Feature: domain Description: McrA Location: 1002176-1002452 bp Feature: gene Location: 1003509-1003751 bp Ori: GAX42372.1 Feature: domain Description: YflT Location: 1003545-1003725 bp Feature: domain Description: YflT Location: 1003545-1003725 bp Feature: gene Location: 1003770-1004069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), RVT-CRISPR, SpoT (COG0317), GT4_AviGT4-like (cd03802), DICT (pfam10069), BaeS (COG0642), RVT_N (pfam13655), RVT-GII, Intron_maturas2 (pfam01348)
HNHc (smart00507), McrA (COG4058), PsaD (pfam02531), psaB (TIGR01336), GalK (COG0153), GIIM (pfam08388), InsQ (COG0675), YflT (pfam11181)

Seq: BDUC01000024.1 Tolypothrix sp. NIES-4075 DNA, scaffold: sequence24, whole genome shotgun sequence (35748 bp)
Overview 1 RT 1: 2262-6708 bp Neighborhood of RT #1 [2262, 6708] Phage_int_SAM_4 xerC RVT_N RVT-GII GIIM HNHc HTH_23 Feature: gene Location: 2262-2591 bp Ori: GAX45972.1 Feature: domain Description: Phage_int_SAM_4 Location: 2292-2514 bp Feature: domain Description: Phage_int_SAM_4 Location: 2292-2514 bp Feature: gene Location: 2592-3158 bp Ori: GAX45973.1 Feature: domain Description: xerC Location: 2601-3132 bp Feature: domain Description: xerC Location: 2601-3132 bp Feature: gene Location: 4056-5729 bp Ori: GAX45974.1 Feature: domain Description: RVT_N Location: 4098-4341 bp Feature: domain Description: RVT_N Location: 4098-4341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4392-5031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4392-5031 bp Feature: domain Description: GIIM Note: maturase Location: 5103-5337 bp Feature: domain Description: GIIM Note: maturase Location: 510 3-5337 bp Feature: domain Description: HNHc Note: nucleases Location: 5541-5706 bp Feature: domain Description: HNHc Note: nucleases Location: 5541-5706 bp Feature: gene Location: 6112-6477 bp Ori: GAX45975.1 Feature: domain Description: HTH_23 Location: 6196-6340 bp Feature: domain Description: HTH_23 Location: 6196-6340 bp Feature: gene Location: 6355-6708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_4 (pfam13495), xerC (PRK01287), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), HTH_23 (pfam13384)

Seq: BDUC01000042.1 Tolypothrix sp. NIES-4075 DNA, scaffold: sequence42, whole genome shotgun sequence (10421 bp)
Overview 1 RT 1: 2796-6993 bp Neighborhood of RT #1 [2796, 7130] DDE_3 RVT-CRISPR-like Uma2 HTH_XRE DUF4384 Feature: gene Location: 2796-3338 bp Ori: GAX46314.1 Feature: domain Description: DDE_3 Location: 2826-3234 bp Feature: domain Description: DDE_3 Location: 2826-3234 bp Feature: gene Location: 3668-3922 bp Feature: gene Location: 4486-5391 bp Ori: GAX46316.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4675-5281 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4675-5281 bp Feature: gene Location: 5719-6342 bp Ori: GAX46317.1 Feature: domain Description: Uma2 Location: 5764-6316 bp Feature: domain Description: Uma2 Location: 5764-6316 bp Feature: gene Location: 6372-7130 bp Ori: GAX46318.1 Feature: domain Description: HTH_XRE Location: 6417-6576 bp Feature: domain Description: HTH_XRE Location: 6417-6576 bp Feature: domain Description: DUF4384 Location: 6759-6993 bp Feature: domain Description: DUF4384 Location: 6759-6993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-CRISPR, Uma2 (pfam05685), HTH_XRE (smart00530), DUF4384 (pfam14326)