myRT

myRT report for GCA_002218615.1_ASM221861v1

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Seq: LYQR01000002.1 Lactobacillus crispatus strain UMNLC1 contig_10, whole genome shotgun sequence (14465 bp)
Overview 1 RT 1: 11537-14239 bp Neighborhood of RT #1 [11537, 14239] Phage_XkdX RVT-DGRs Feature: gene Location: 11537-11725 bp Feature: domain Description: Phage_XkdX Location: 11621-11684 bp Feature: domain Description: Phage_XkdX Location: 1 1 621 -1 1 684 bp Feature: gene Location: 11743-12375 bp Feature: gene Location: 12414-13553 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12600-13311 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 2600-1 331 1 bp Feature: gene Location: 13796-14239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs

Seq: LYQR01000046.1 Lactobacillus crispatus strain UMNLC1 contig_53, whole genome shotgun sequence (10363 bp)
Overview 1 RT 1: 2488-7030 bp Neighborhood of RT #1 [2488, 7047] COG3464 LysR RVT-GII GIIM group_II_RT_mat DUF956 Feature: gene Location: 2488-3761 bp Feature: domain Description: COG3464 Location: 2620-2992 bp Feature: domain Description: COG3464 Location: 2 62 0-2 992 bp Feature: gene Location: 4093-4926 bp Feature: domain Description: LysR Location: 4099-4915 bp Feature: domain Description: LysR Location: 4099-4915 bp Feature: gene Location: 4996-5766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4999-5287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4999-52 87 bp Feature: domain Description: GIIM Note: maturase Location: 5344-5545 bp Feature: domain Description: GIIM Note: maturase Location: 5344-5545 bp Feature: gene Location: 5892-6074 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5925-6051 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 592 5-6051 bp Feature: gene Location: 6679-7047 bp Feature: domain Description: DUF956 Location: 6682-7030 bp Feature: domain Description: DUF956 Location: 6682 -7030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3464 (Transposase ), LysR (COG0583), RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416), DUF956 (pfam06115)

Seq: LYQR01000015.1 Lactobacillus crispatus strain UMNLC1 contig_19, whole genome shotgun sequence (45403 bp)
Overview 1 RT 1: 9659-13677 bp Neighborhood of RT #1 [9659, 13685] ribH RVT-GII Tra8 Tra8 Glyco_hydro_8 Feature: gene Location: 9659-10123 bp Feature: domain Description: ribH Location: 9662-10118 bp Feature: domain Description: ribH Location: 9662-10118 bp Feature: gene Location: 10202-10399 bp Feature: gene Location: 10582-11166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10585-11143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10585-11143 bp Feature: gene Location: 11556-12221 bp Feature: domain Description: Tra8 Location: 11586-12003 bp Feature: domain Description: Tra8 Location: 11586-12003 bp Feature: domain Description: Tra8 Location: 12105-12210 bp Feature: domain Description: Tra8 Location: 12105-12210 bp Feature: gene Location: 12588-13685 bp Feature: domain Description: Glyco_hydro_8 Location: 12705-13677 bp Feature: domain Description: Glyco_hydro_8 Location: 12705-13 677 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Tra8 (COG2826), Glyco_hydro_8 (pfam01270), ribH (PRK00061)