myRT

myRT report for GCA_002218685.1_ASM221868v1

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Seq: LYQY01000039.1 Lactobacillus crispatus strain UMNLC8 crispatus9D6S21149, whole genome shotgun sequence (36419 bp)
Overview 1 RT 1: 25640-29661 bp Neighborhood of RT #1 [25640, 29666] Glyco_hydro_8 Tra8 Tra8 RVT-GII ribH Feature: gene Location: 25640-26737 bp Ori: OXC24803.1 Feature: domain Description: Glyco_hydro_8 Location: 25757-26729 bp Feature: domain Description: Glyco_hydro_8 Location: 25757-26729 bp Feature: gene Location: 27104-27769 bp Feature: domain Description: Tra8 Location: 27134-27551 bp Feature: domain Description: Tra8 Location: 271 34-27551 bp Feature: domain Description: Tra8 Location: 27653-27758 bp Feature: domain Description: Tra8 Location: 27653-27758 bp Feature: gene Location: 28159-28743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28162-28720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 62-28720 bp Feature: gene Location: 28926-29123 bp Feature: gene Location: 29202-29666 bp Ori: OXC24805.1 Feature: domain Description: ribH Location: 29205-29661 bp Feature: domain Description: ribH Location: 29205-29661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_8 (pfam01270), Tra8 (COG2826), RVT-GII, ribH (PRK00061)

Seq: LYQY01000033.1 Lactobacillus crispatus strain UMNLC8 crispatus9D6S21141, whole genome shotgun sequence (25159 bp)
Overview 1 RT 1: 17528-22070 bp Neighborhood of RT #1 [17528, 22087] COG3464 LysR RVT-GII GIIM group_II_RT_mat DUF956 Feature: gene Location: 17528-18801 bp Feature: domain Description: COG3464 Location: 17660-18032 bp Feature: domain Description: COG3464 Location: 17660-18032 bp Feature: gene Location: 19133-19966 bp Ori: OXC25016.1 Feature: domain Description: LysR Location: 19139-19955 bp Feature: domain Description: LysR Location: 19139-19955 bp Feature: gene Location: 20036-20806 bp Ori: OXC25010.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20039-20327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0039-2 032 7 bp Feature: domain Description: GIIM Note: maturase Location: 20384-20585 bp Feature: domain Description: GIIM Note: maturase Location: 2 0384-2 0585 bp Feature: gene Location: 20932-21114 bp Ori: OXC25011.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 20965-21091 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2 0965-2 1091 bp Feature: gene Location: 21719-22087 bp Ori: OXC25012.1 Feature: domain Description: DUF956 Location: 21722-22070 bp Feature: domain Description: DUF956 Location: 2 172 2 -2 2 070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3464 (Transposase ), LysR (COG0583), RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416), DUF956 (pfam06115)

Seq: LYQY01000050.1 Lactobacillus crispatus strain UMNLC8 crispatus9D6S21163, whole genome shotgun sequence (5627 bp)
Overview 1 RT 1: 757-5258 bp Neighborhood of RT #1 [757, 5627] Glyco_hydro_68 Abi_2 RVT-AbiK Feature: gene Location: 757-2730 bp Ori: OXC24319.1 Feature: domain Description: Glyco_hydro_68 Location: 1291-2626 bp Feature: domain Description: Glyco_hydro_68 Location: 1291-2626 bp Feature: gene Location: 2988-3974 bp Ori: OXC24320.1 Feature: domain Description: Abi_2 Location: 3090-3714 bp Feature: domain Description: Abi_2 Location: 3 090-3 714 bp Feature: gene Location: 4376-5627 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 4796-5258 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 4796-5258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_68 (pfam02435), Abi_2 (pfam07751), RVT-AbiK