myRT

myRT report for GCA_002218805.1_ASM221880v1

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Seq: LYRA01000003.1 Lactobacillus crispatus strain UMNLC10 crispatus10A5S23111, whole genome shotgun sequence (135445 bp)
Overview 1 RT 1: 25526-29547 bp Neighborhood of RT #1 [25526, 29552] Glyco_hydro_8 Tra8 Tra8 RVT-GII ribH Feature: gene Location: 25526-26623 bp Feature: domain Description: Glyco_hydro_8 Location: 25643-26615 bp Feature: domain Description: Glyco_hydro_8 Location: 25643-2661 5 bp Feature: gene Location: 26990-27655 bp Feature: domain Description: Tra8 Location: 27020-27437 bp Feature: domain Description: Tra8 Location: 27020-27437 bp Feature: domain Description: Tra8 Location: 27539-27644 bp Feature: domain Description: Tra8 Location: 27539-27644 bp Feature: gene Location: 28045-28629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28048-28606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28048-28606 bp Feature: gene Location: 28812-29009 bp Feature: gene Location: 29088-29552 bp Feature: domain Description: ribH Location: 29091-29547 bp Feature: domain Description: ribH Location: 29091 -29547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_8 (pfam01270), Tra8 (COG2826), RVT-GII, ribH (PRK00061)

Seq: LYRA01000010.1 Lactobacillus crispatus strain UMNLC10 crispatus10A5S23118, whole genome shotgun sequence (6435 bp)
Overview 1 RT 1: 1-3349 bp Neighborhood of RT #1 [1, 3366] LysR RVT-GII GIIM group_II_RT_mat DUF956 Feature: gene Location: 1-143 bp Feature: gene Location: 412-1245 bp Feature: domain Description: LysR Location: 418-1234 bp Feature: domain Description: LysR Location: 418-12 34 bp Feature: gene Location: 1315-2085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1318-1606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1318-1606 bp Feature: domain Description: GIIM Note: maturase Location: 1663-1864 bp Feature: domain Description: GIIM Note: maturase Location: 1663-1864 bp Feature: gene Location: 2211-2393 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2244-2370 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2 2 44-2 370 bp Feature: gene Location: 2998-3366 bp Feature: domain Description: DUF956 Location: 3001-3349 bp Feature: domain Description: DUF956 Location: 3001-3349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416), DUF956 (pfam06115), LysR (COG0583)