myRT

myRT report for GCA_002218815.1_ASM221881v1

Download annotations/find similar RTs

Seq: LYRB01000010.1 Lactobacillus crispatus strain UMNLC11 crispatus9E6S24119, whole genome shotgun sequence (6283 bp)
Overview 1 RT 1: 1413-5914 bp Neighborhood of RT #1 [1413, 6283] Glyco_hydro_68 Abi_2 RVT-AbiK Feature: gene Location: 1413-3386 bp Ori: OXC33583.1 Feature: domain Description: Glyco_hydro_68 Location: 1947-3282 bp Feature: domain Description: Glyco_hydro_68 Location: 1 947-3282 bp Feature: gene Location: 3644-4630 bp Ori: OXC33584.1 Feature: domain Description: Abi_2 Location: 3746-4370 bp Feature: domain Description: Abi_2 Location: 3746-4370 bp Feature: gene Location: 5032-6283 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 5452-5914 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 5452-591 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_68 (pfam02435), Abi_2 (pfam07751), RVT-AbiK

Seq: LYRB01000020.1 Lactobacillus crispatus strain UMNLC11 crispatus9E6S24128, whole genome shotgun sequence (36304 bp)
Overview 1 RT 1: 25525-29546 bp Neighborhood of RT #1 [25525, 29551] Glyco_hydro_8 Tra8 Tra8 RVT-GII ribH Feature: gene Location: 25525-26622 bp Ori: OXC32840.1 Feature: domain Description: Glyco_hydro_8 Location: 25642-26614 bp Feature: domain Description: Glyco_hydro_8 Location: 2 5642 -2 6614 bp Feature: gene Location: 26989-27654 bp Feature: domain Description: Tra8 Location: 27019-27436 bp Feature: domain Description: Tra8 Location: 2 7019-2 7436 bp Feature: domain Description: Tra8 Location: 27538-27643 bp Feature: domain Description: Tra8 Location: 2 7538-2 7643 bp Feature: gene Location: 28044-28628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28047-28605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8047-2 8605 bp Feature: gene Location: 28811-29008 bp Feature: gene Location: 29087-29551 bp Ori: OXC32842.1 Feature: domain Description: ribH Location: 29090-29546 bp Feature: domain Description: ribH Location: 2 9090-2 9546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_8 (pfam01270), Tra8 (COG2826), RVT-GII, ribH (PRK00061)

Seq: LYRB01000055.1 Lactobacillus crispatus strain UMNLC11 crispatus9E6S24165, whole genome shotgun sequence (10127 bp)
Overview 1 RT 1: 3073-6863 bp Neighborhood of RT #1 [3073, 7632] DUF956 group_II_RT_mat RVT-GII GIIM LysR COG3464 Feature: gene Location: 3073-3441 bp Ori: OXC30088.1 Feature: domain Description: DUF956 Location: 3076-3424 bp Feature: domain Description: DUF956 Location: 3 076-3 424 bp Feature: gene Location: 4046-4228 bp Ori: OXC30089.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 4079-4205 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4079-4205 bp Feature: gene Location: 4354-5124 bp Ori: OXC30090.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4357-4645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 57-4645 bp Feature: domain Description: GIIM Note: maturase Location: 4702-4903 bp Feature: domain Description: GIIM Note: maturase Location: 4702-4903 bp Feature: gene Location: 5194-6027 bp Ori: OXC30092.1 Feature: domain Description: LysR Location: 5200-6016 bp Feature: domain Description: LysR Location: 5200-6016 bp Feature: gene Location: 6359-7632 bp Feature: domain Description: COG3464 Location: 6491-6863 bp Feature: domain Description: COG3 464 Location: 6491-6863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF956 (pfam06115), group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), LysR (COG0583), COG3464 (Transposase )