myRT

myRT report for GCA_002218845.1_ASM221884v1

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Seq: LYRD01000060.1 Lactobacillus crispatus strain UMNLC13 crispatus9E9S26147, whole genome shotgun sequence (8318 bp)
Overview 1 RT 1: 687-5229 bp Neighborhood of RT #1 [687, 5246] COG3464 LysR RVT-GII GIIM group_II_RT_mat DUF956 Feature: gene Location: 687-1960 bp Feature: domain Description: COG3464 Location: 819-1191 bp Feature: domain Description: COG3464 Location: 81 9-1 1 91 bp Feature: gene Location: 2292-3125 bp Ori: OXC35983.1 Feature: domain Description: LysR Location: 2298-3114 bp Feature: domain Description: LysR Location: 2298-31 1 4 bp Feature: gene Location: 3195-3965 bp Ori: OXC35977.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3198-3486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 98-3486 bp Feature: domain Description: GIIM Note: maturase Location: 3543-3744 bp Feature: domain Description: GIIM Note: maturase Location: 3543-3744 bp Feature: gene Location: 4091-4273 bp Ori: OXC35978.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 4124-4250 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 41 24-4250 bp Feature: gene Location: 4878-5246 bp Ori: OXC35979.1 Feature: domain Description: DUF956 Location: 4881-5229 bp Feature: domain Description: DUF956 Location: 4881 -5229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3464 (Transposase ), LysR (COG0583), RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416), DUF956 (pfam06115)

Seq: LYRD01000061.1 Lactobacillus crispatus strain UMNLC13 crispatus9E9S26148, whole genome shotgun sequence (30375 bp)
Overview 1 RT 1: 21366-25387 bp Neighborhood of RT #1 [21366, 25392] Glyco_hydro_8 Tra8 Tra8 RVT-GII ribH Feature: gene Location: 21366-22463 bp Ori: OXC35915.1 Feature: domain Description: Glyco_hydro_8 Location: 21483-22455 bp Feature: domain Description: Glyco_hydro_8 Location: 2 1483-2 2 455 bp Feature: gene Location: 22830-23495 bp Feature: domain Description: Tra8 Location: 22860-23277 bp Feature: domain Description: Tra8 Location: 2 2 860-2 32 77 bp Feature: domain Description: Tra8 Location: 23379-23484 bp Feature: domain Description: Tra8 Location: 2 3379-2 3484 bp Feature: gene Location: 23885-24469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23888-24446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3888-2 4446 bp Feature: gene Location: 24652-24849 bp Feature: gene Location: 24928-25392 bp Ori: OXC35917.1 Feature: domain Description: ribH Location: 24931-25387 bp Feature: domain Description: ribH Location: 2 4931-2 5387 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_8 (pfam01270), Tra8 (COG2826), RVT-GII, ribH (PRK00061)

Seq: LYRD01000047.1 Lactobacillus crispatus strain UMNLC13 crispatus9E9S26135, whole genome shotgun sequence (20653 bp)
Overview 1 RT 1: 1-4526 bp Neighborhood of RT #1 [1, 4630] RVT-AbiK Abi_2 Glyco_hydro_68 Feature: gene Location: 1-1011 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 469-889 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 469-889 bp Feature: gene Location: 1413-2399 bp Ori: OXC36697.1 Feature: domain Description: Abi_2 Location: 1515-2139 bp Feature: domain Description: Abi_2 Location: 1515-213 9 bp Feature: gene Location: 2657-4630 bp Ori: OXC36698.1 Feature: domain Description: Glyco_hydro_68 Location: 3191-4526 bp Feature: domain Description: Glyco_hydro_68 Location: 3 191-4526 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiK, Abi_2 (pfam07751), Glyco_hydro_68 (pfam02435)