myRT

myRT report for GCA_002218885.1_ASM221888v1

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Seq: LYRE01000054.1 Lactobacillus crispatus strain UMNLC14 crispatus10B5S27157, whole genome shotgun sequence (15075 bp)
Overview 1 RT 1: 10230-14753 bp Neighborhood of RT #1 [10230, 15075] Glyco_hydro_68 Abi_2 RVT-AbiK Feature: gene Location: 10230-12226 bp Feature: domain Description: Glyco_hydro_68 Location: 10788-11151 bp Feature: domain Description: Glyco_hydro_68 Location: 1 0788-1 1 1 51 bp Feature: gene Location: 12484-13470 bp Ori: OXC36694.1 Feature: domain Description: Abi_2 Location: 12586-13210 bp Feature: domain Description: Abi_2 Location: 1 2586-1 321 0 bp Feature: gene Location: 13871-15075 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 14291-14753 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 1 4291 -1 4753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_68 (pfam02435), Abi_2 (pfam07751), RVT-AbiK

Seq: LYRE01000040.1 Lactobacillus crispatus strain UMNLC14 crispatus10B5S27142, whole genome shotgun sequence (42490 bp)
Overview 1 RT 1: 12939-16957 bp Neighborhood of RT #1 [12939, 16965] ribH RVT-GII Tra8 Tra8 Glyco_hydro_8 Feature: gene Location: 12939-13403 bp Ori: OXC37533.1 Feature: domain Description: ribH Location: 12942-13398 bp Feature: domain Description: ribH Location: 12 942 -13398 bp Feature: gene Location: 13482-13679 bp Feature: gene Location: 13862-14446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13865-14423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13865-1442 3 bp Feature: gene Location: 14836-15501 bp Feature: domain Description: Tra8 Location: 14866-15283 bp Feature: domain Description: Tra8 Location: 14866-152 83 bp Feature: domain Description: Tra8 Location: 15385-15490 bp Feature: domain Description: Tra8 Location: 15385-15490 bp Feature: gene Location: 15868-16965 bp Ori: OXC37535.1 Feature: domain Description: Glyco_hydro_8 Location: 15985-16957 bp Feature: domain Description: Glyco_hydro_8 Location: 15985-16957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ribH (PRK00061), RVT-GII, Tra8 (COG2826), Glyco_hydro_8 (pfam01270)

Seq: LYRE01000005.1 Lactobacillus crispatus strain UMNLC14 crispatus10B5S27111, whole genome shotgun sequence (23957 bp)
Overview 1 RT 1: 3073-6956 bp Neighborhood of RT #1 [3073, 7637] DUF956 group_II_RT_mat RVT-GII GIIM LysR COG3464 Feature: gene Location: 3073-3441 bp Ori: OXC39931.1 Feature: domain Description: DUF956 Location: 3076-3424 bp Feature: domain Description: DUF956 Location: 3 076-3 424 bp Feature: gene Location: 4046-4228 bp Ori: OXC39932.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 4079-4205 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4079-4205 bp Feature: gene Location: 4354-5124 bp Ori: OXC39933.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4357-4645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 57-4645 bp Feature: domain Description: GIIM Note: maturase Location: 4702-4903 bp Feature: domain Description: GIIM Note: maturase Location: 4702-4903 bp Feature: gene Location: 5194-6027 bp Ori: OXC39944.1 Feature: domain Description: LysR Location: 5200-6016 bp Feature: domain Description: LysR Location: 5200-6016 bp Feature: gene Location: 6359-7637 bp Feature: domain Description: COG3464 Location: 6491-6956 bp Feature: domain Description: COG3 464 Location: 6491-6956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF956 (pfam06115), group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), LysR (COG0583), COG3464 (Transposase )