myRT

myRT report for GCA_002218925.1_ASM221892v1

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Seq: LYRG01000006.1 Lactobacillus crispatus strain UMNLC16 crispatus-10-B8S4115, whole genome shotgun sequence (97894 bp)
Overview 1 RT 1: 30522-34543 bp Neighborhood of RT #1 [30522, 34548] Glyco_hydro_8 Tra8 Tra8 RVT-GII ribH Feature: gene Location: 30522-31619 bp Feature: domain Description: Glyco_hydro_8 Location: 30639-31611 bp Feature: domain Description: Glyco_hydro_8 Location: 30639-31 61 1 bp Feature: gene Location: 31986-32651 bp Feature: domain Description: Tra8 Location: 32016-32433 bp Feature: domain Description: Tra8 Location: 3201 6-32433 bp Feature: domain Description: Tra8 Location: 32535-32640 bp Feature: domain Description: Tra8 Location: 32535-32640 bp Feature: gene Location: 33041-33625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33044-33602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33044-33602 bp Feature: gene Location: 33808-34005 bp Feature: gene Location: 34084-34548 bp Feature: domain Description: ribH Location: 34087-34543 bp Feature: domain Description: ribH Location: 34087-34543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_8 (pfam01270), Tra8 (COG2826), RVT-GII, ribH (PRK00061)

Seq: LYRG01000005.1 Lactobacillus crispatus strain UMNLC16 crispatus-10-B8S4114, whole genome shotgun sequence (7004 bp)
Overview 1 RT 1: 3142-6974 bp Neighborhood of RT #1 [3142, 6982] DUF956 group_II_RT_mat RVT-GII GIIM LysR Transposase_mut Feature: gene Location: 3142-3510 bp Feature: domain Description: DUF956 Location: 3145-3493 bp Feature: domain Description: DUF956 Location: 3145-3493 bp Feature: gene Location: 4115-4297 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4148-4274 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4148-42 74 bp Feature: gene Location: 4423-5193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4426-4714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 442 6-4714 bp Feature: domain Description: GIIM Note: maturase Location: 4771-4972 bp Feature: domain Description: GIIM Note: maturase Location: 4771-4972 bp Feature: gene Location: 5263-6096 bp Feature: domain Description: LysR Location: 5269-6085 bp Feature: domain Description: LysR Location: 52 69-6085 bp Feature: gene Location: 6365-6982 bp Feature: domain Description: Transposase_mut Location: 6404-6974 bp Feature: domain Description: Transposase_mut Location: 6404-6974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF956 (pfam06115), group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), LysR (COG0583), Transposase_mut (pfam00872)

Seq: LYRG01000055.1 Lactobacillus crispatus strain UMNLC16 crispatus-10-B8S418, whole genome shotgun sequence (50694 bp)
Overview 1 RT 1: 22660-26343 bp Neighborhood of RT #1 [22660, 26343] Phage_XkdX RVT-DGRs Feature: gene Location: 22660-22848 bp Feature: domain Description: Phage_XkdX Location: 22744-22807 bp Feature: domain Description: Phage_XkdX Location: 22744-22807 bp Feature: gene Location: 22866-23498 bp Feature: gene Location: 23537-24676 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 23723-24434 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 23 723 -2443 4 bp Feature: gene Location: 24919-25362 bp Feature: gene Location: 25477-26343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs