myRT

myRT report for GCA_002220305.1_ASM222030v1

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Seq: CP016436.1 Burkholderia sp. AD24 plasmid unnamed1 sequence (322651 bp)
Overview 1 RT 1: 40494-45957 bp Neighborhood of RT #1 [40494, 45974] HxlR nitrilase RVT_N RVT-GII HTH_1 PBP2_LTTR_like_1 Feature: gene Location: 40494-40904 bp Ori: ASL48756.1 Feature: domain Description: HxlR Location: 40500-40680 bp Feature: domain Description: HxlR Location: 40500-40680 bp Feature: gene Location: 42194-42979 bp Ori: ASL48757.1 Gene: ramA Feature: domain Description: nitrilase Location: 42284-42932 bp Feature: domain Description: nitrilase Location: 42284-42932 bp Feature: gene Location: 43766-44875 bp Ori: ASL48758.1 Gene: ltrA Feature: domain Description: RVT_N Location: 43841-44081 bp Feature: domain Description: RVT_N Location: 43841 -44081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44129-44564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441 29-44564 bp Feature: gene Location: 44813-45055 bp Feature: gene Location: 45093-45974 bp Ori: ASL48760.1 Gene: cmpR Feature: domain Description: HTH_1 Location: 45111-45282 bp Feature: domain Description: HTH_1 Location: 451 1 1 -45282 bp Feature: domain Description: PBP2_LTTR_like_1 Location: 45375-45957 bp Feature: domain Description: PBP2_LTTR_like_1 Location: 45375-45957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HxlR (pfam01638), nitrilase (cl11424), RVT_N (pfam13655), RVT-GII, HTH_1 (pfam00126), PBP2_LTTR_like_1 (cd08421)

Seq: CP016434.1 Burkholderia sp. AD24 chromosome I sequence (4476936 bp)
Overview 1 RT 1: 364103-371903 bp 2 RT 2: 2453358-2459247 bp Neighborhood of RT #1 [364103, 371914] HTH_28 rve HTH_32 RVT-UG5 ETR_like LysR Neighborhood of RT #2 [2453358, 2459315] 2A0305 GlxA GyrI-like RVT-Retrons TniQ TniQ YdcF-like Feature: gene Location: 364103-365539 bp Ori: ASL42170.1 Feature: domain Description: HTH_28 Location: 364151-364304 bp Feature: domain Description: HTH_2 8 Location: 364151-364304 bp Feature: domain Description: rve Location: 364529-364895 bp Feature: domain Description: rve Location: 36452 9-364895 bp Feature: gene Location: 365803-366630 bp Ori: ASL42171.1 Feature: domain Description: HTH_32 Location: 365935-366151 bp Feature: domain Description: HTH_32 Location: 365935-366151 bp Feature: gene Location: 366665-369718 bp Ori: ASL42172.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 367232-367682 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3672 32 -367682 bp Feature: gene Location: 369901-370896 bp Ori: ASL42173.1 Feature: domain Description: ETR_like Location: 369925-370873 bp Feature: domain Description: ETR_like Location: 36992 5-370873 bp Feature: gene Location: 371006-371914 bp Ori: ASL42174.1 Gene: dmlR_6 Feature: domain Description: LysR Location: 371036-371903 bp Feature: domain Description: LysR Location: 371036-371903 bp Feature: gene Location: 2453358-2454761 bp Ori: ASL43957.1 Gene: yhdG_2 Feature: domain Description: 2A0305 Location: 2453403-2454747 bp Feature: domain Description: 2 A0305 Location: 2 453403-2 454747 bp Feature: gene Location: 2455016-2455882 bp Ori: ASL43958.1 Gene: marA Feature: domain Description: GlxA Location: 2455043-2455361 bp Feature: domain Description: GlxA Location: 2 455043-2 455361 bp Feature: domain Description: GyrI-like Location: 2455415-2455877 bp Feature: domain Description: GyrI-like Location: 2 455415-2 455877 bp Feature: gene Location: 2456381-2457853 bp Ori: ASL43959.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2456945-2457584 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 456945-2 457584 bp Feature: gene Location: 2457824-2458525 bp Ori: ASL43960.1 Feature: domain Description: TniQ Location: 2458007-2458124 bp Feature: domain Description: TniQ Location: 2 458007-2 45812 4 bp Feature: domain Description: TniQ Location: 2458178-2458499 bp Feature: domain Description: TniQ Location: 2 458178-2 458499 bp Feature: gene Location: 2458755-2459315 bp Ori: ASL43961.1 Feature: domain Description: YdcF-like Location: 2458854-2459247 bp Feature: domain Description: YdcF-like Location: 2 458854-2 4592 47 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), rve (pfam00665), HTH_32 (pfam13565), RVT-UG5, ETR_like (cd05282), LysR (COG0583), 2A0305 (TIGR00908), GlxA (COG4977), GyrI-like (pfam06445), RVT-Retrons
TniQ (pfam06527), YdcF-like (cl00630)

Seq: CP016435.1 Burkholderia sp. AD24 chromosome II sequence (3439310 bp)
Overview 1 RT 1: 1128052-1131926 bp 2 RT 2: 2048147-2056199 bp Neighborhood of RT #1 [1128052, 1131926] PRK12545 RVT-GII Neighborhood of RT #2 [2048147, 2056237] Gluconate_2-dh3 RVT-UG3 RVT-UG8 gram_neg_porins DUF4148 Feature: gene Location: 1128052-1128660 bp Ori: ASL46726.1 Gene: sigG Feature: domain Description: PRK12545 Location: 1128064-1128658 bp Feature: domain Description: PRK12545 Location: 1128064-1128658 bp Feature: gene Location: 1129105-1129236 bp Feature: gene Location: 1129987-1130796 bp Ori: ASL46728.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1130104-1130719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113 0104-113 0719 bp Feature: gene Location: 1131361-1131645 bp Feature: gene Location: 1131765-1131926 bp Feature: gene Location: 2048147-2048947 bp Ori: ASL47534.1 Feature: domain Description: Gluconate_2-dh3 Location: 2048402-2048861 bp Feature: domain Description: Gluconate_2-dh3 Location: 2048402-2048861 bp Feature: gene Location: 2049183-2049653 bp Feature: gene Location: 2050657-2051892 bp Ori: ASL47536.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2050906-2051413 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2050906-2051413 bp Feature: gene Location: 2051885-2053852 bp Ori: ASL47537.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2052413-2052860 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2052413 -2052860 bp Feature: gene Location: 2054430-2055704 bp Ori: ASL47538.1 Feature: domain Description: gram_neg_porins Location: 2054592-2055702 bp Feature: domain Description: gram_neg_porins Location: 2054592-2055702 bp Feature: gene Location: 2055968-2056237 bp Ori: ASL47539.1 Feature: domain Description: DUF4148 Location: 2055986-2056199 bp Feature: domain Description: DUF4148 Location: 2055986-2056199 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12545 (RNA polymerase factor sigma-70), RVT-GII, Gluconate_2-dh3 (pfam13618), RVT-UG3, RVT-UG8, gram_neg_porins (cd00342), DUF4148 (pfam13663)