myRT

myRT report for GCA_002221545.1_ASM222154v1

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Seq: NHTR01000008.1 [Clostridium] clostridioforme strain YL32 NODE_8_length_321604_cov_78.7366_ID_19629, whole genome shotgun sequence (321604 bp)
Overview 1 RT 1: 113817-121787 bp Neighborhood of RT #1 [113817, 121792] QueH PtsH RVT-UNC KOG0399 GOGAT_sm_gam Feature: gene Location: 113817-114443 bp Ori: OXE63543.1 Feature: domain Description: QueH Location: 113907-114435 bp Feature: domain Description: QueH Location: 1 1 3907-1 1 4435 bp Feature: gene Location: 114617-114883 bp Ori: OXE63376.1 Feature: domain Description: PtsH Location: 114620-114878 bp Feature: domain Description: PtsH Location: 1 1 4620-1 1 4878 bp Feature: gene Location: 115288-115704 bp Ori: OXE63377.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 115609-115678 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 1 5609-1 1 5678 bp Feature: gene Location: 115748-120289 bp Ori: OXE63378.1 Feature: domain Description: KOG0399 Location: 115763-120266 bp Feature: domain Description: KOG0399 Location: 1 1 5763-1 20266 bp Feature: gene Location: 120305-121792 bp Ori: OXE63379.1 Feature: domain Description: GOGAT_sm_gam Location: 120314-121787 bp Feature: domain Description: GOGAT_sm_gam Location: 1 2031 4-1 21 787 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT QueH, PtsH (COG1925), RVT-GII/RVT-CRISPR/RVT-UG1(RVT-UNC), KOG0399 (KOG0399, Glutamate synthase ), GOGAT_sm_gam (TIGR01317)

Seq: NHTR01000009.1 [Clostridium] clostridioforme strain YL32 NODE_9_length_293790_cov_93.6508_ID_19394, whole genome shotgun sequence (293790 bp)
Overview 1 RT 1: 186036-189750 bp 2 RT 2: 282329-286236 bp Neighborhood of RT #1 [186036, 189848] GIIM RVT-GII TraC-F-type Peptidase_C39_2 Neighborhood of RT #2 [282329, 286698] HTH_21 PHA02517 RVT-GII GIIM PinE Zn_ribbon_recom Feature: gene Location: 186036-186170 bp Feature: gene Location: 186172-186429 bp Feature: domain Description: GIIM Note: maturase Location: 186178-186382 bp Feature: domain Description: GIIM Note: maturase Location: 186178-186382 bp Feature: gene Location: 186680-186814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186686-186815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186686-186815 bp Feature: gene Location: 186881-188620 bp Feature: domain Description: TraC-F-type Location: 187568-188594 bp Feature: domain Description: TraC-F-type Location: 187568-188594 bp Feature: gene Location: 188709-189848 bp Ori: OXE63024.1 Feature: domain Description: Peptidase_C39_2 Location: 189351-189750 bp Feature: domain Description: Peptidase_C39_2 Location: 189351-189750 bp Feature: gene Location: 282329-282796 bp Ori: OXE63010.1 Feature: domain Description: HTH_21 Location: 282530-282689 bp Feature: domain Description: HTH_2 1 Location: 2 82 530-2 82 689 bp Feature: gene Location: 282854-283189 bp Ori: OXE63011.1 Feature: domain Description: PHA02517 Location: 282869-283187 bp Feature: domain Description: PHA02 517 Location: 2 82 869-2 83187 bp Feature: gene Location: 283370-284392 bp Ori: OXE63033.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283373-283940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 83373-2 83940 bp Feature: domain Description: GIIM Note: maturase Location: 283997-284216 bp Feature: domain Description: GIIM Note: maturase Location: 2 83997-2 842 16 bp Feature: gene Location: 284596-284916 bp Feature: gene Location: 285054-286698 bp Feature: domain Description: PinE Location: 285114-285798 bp Feature: domain Description: PinE Location: 2 85114-2 85798 bp Feature: domain Description: Zn_ribbon_recom Location: 286062-286236 bp Feature: domain Description: Zn_ribbon_recom Location: 2 86062 -2 862 36 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, TraC-F-type (TIGR02746), Peptidase_C39_2 (pfam13529), HTH_21 (pfam13276), PHA02517 (putative transposase OrfB; Reviewed), PinE (COG1961), Zn_ribbon_recom (pfam13408)

Seq: NHTR01000004.1 [Clostridium] clostridioforme strain YL32 NODE_4_length_706697_cov_115.315_ID_20211, whole genome shotgun sequence (706697 bp)
Overview 1 RT 1: 347159-352562 bp Neighborhood of RT #1 [347159, 352627] HMA HTH_ARSR RVT-GII GIIM aspS hisS Feature: gene Location: 347159-347377 bp Ori: OXE66271.1 Feature: domain Description: HMA Location: 347174-347321 bp Feature: domain Description: HMA Location: 3 47174-3 473 21 bp Feature: gene Location: 347455-347814 bp Ori: OXE66272.1 Feature: domain Description: HTH_ARSR Location: 347602-347788 bp Feature: domain Description: HTH_ARSR Location: 3 47602-3 47788 bp Feature: gene Location: 348020-349306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 348239-348851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 4823 9-3 48851 bp Feature: domain Description: GIIM Note: maturase Location: 348911-349130 bp Feature: domain Description: GIIM Note: maturase Location: 3 48911-3 4913 0 bp Feature: gene Location: 349537-351339 bp Ori: OXE66273.1 Feature: domain Description: aspS Location: 349564-351316 bp Feature: domain Description: aspS Location: 3 49564-3 513 16 bp Feature: gene Location: 351362-352627 bp Ori: OXE66274.1 Feature: domain Description: hisS Location: 351380-352562 bp Feature: domain Description: hisS Location: 3 513 80-3 52562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HMA (pfam00403), HTH_ARSR (smart00418), RVT-GII, GIIM (pfam08388), aspS (PRK00476), hisS (TIGR00442)

Seq: NHTR01000006.1 [Clostridium] clostridioforme strain YL32 NODE_6_length_375426_cov_83.9845_ID_18766, whole genome shotgun sequence (375426 bp)
Overview 1 RT 1: 433-4712 bp 2 RT 2: 184047-200806 bp 3 RT 3: 213173-219371 bp 4 RT 4: 360172-363690 bp Neighborhood of RT #1 [433, 4843] TraG-D_C RVT-GII T4SS-DNA_transf lp_hng_hel_AbrB Neighborhood of RT #2 [184047, 200811] Tn7_Tnp_TnsA_N Tn7_Tnp_TnsA_C Spr RVT-GII HNHc TraC-F-type RVT-GII TraC-F-type PrgI SpoVG RVT-GII Intron_maturas2 HNHc Maff2 Neighborhood of RT #3 [213173, 219838] Maff2 TraG-D_C RVT-GII HNHc TraG_VirD4 DnaG DUF3991 Toprim_2 AAA_25 Neighborhood of RT #4 [360172, 363701] SAP 2A0121 RVT-Retrons DDE_3 HTH_29 HTH_32 Feature: gene Location: 433-672 bp Feature: gene Location: 768-1391 bp Ori: OXE64178.1 Feature: domain Description: TraG-D_C Location: 846-1167 bp Feature: domain Description: TraG-D_C Location: 84 6-1167 bp Feature: gene Location: 1416-3325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1725-2109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1725-2109 bp Feature: gene Location: 4085-4438 bp Feature: domain Description: T4SS-DNA_transf Location: 4106-4382 bp Feature: domain Description: T4 SS-DNA_transf Location: 4 106-4 382 bp Feature: gene Location: 4586-4843 bp Ori: OXE64179.1 Feature: domain Description: lp_hng_hel_AbrB Location: 4601-4712 bp Feature: domain Description: lp_hng_hel_AbrB Location: 4 601-4 712 bp Feature: gene Location: 184047-184859 bp Ori: OXE64331.1 Feature: domain Description: Tn7_Tnp_TnsA_N Location: 184272-184542 bp Feature: domain Description: Tn7_Tnp_TnsA_N Location: 184 272-184 54 2 bp Feature: domain Description: Tn7_Tnp_TnsA_C Location: 184548-184791 bp Feature: domain Description: Tn7_Tnp_TnsA_C Location: 184 54 8-184 791 bp Feature: gene Location: 185018-185341 bp Feature: domain Description: Spr Location: 185021-185324 bp Feature: domain Description: Spr Location: 185021-185324 bp Feature: gene Location: 185441-187399 bp Ori: OXE64332.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 185777-186521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 185777-186521 bp Feature: domain Description: HNHc Note: nucleases Location: 187100-187241 bp Feature: domain Description: HNHc Note: nucleases Location: 187100-18724 1 bp Feature: gene Location: 188124-190554 bp Feature: gene Location: 190595-190951 bp Feature: domain Description: TraC-F-type Location: 190619-190757 bp Feature: domain Description: TraC-F-type Location: 190619-190757 bp Feature: gene Location: 191062-192987 bp Ori: OXE64333.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 191380-192112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 191380-192112 bp Feature: gene Location: 193761-195665 bp Feature: domain Description: TraC-F-type Location: 194499-195588 bp Feature: domain Description: TraC-F-type Location: 194 4 99-195588 bp Feature: gene Location: 195763-196197 bp Ori: OXE64334.1 Feature: domain Description: PrgI Location: 195778-196048 bp Feature: domain Description: PrgI Location: 195778-19604 8 bp Feature: gene Location: 196783-197226 bp Ori: OXE64336.1 Feature: domain Description: SpoVG Location: 196846-197077 bp Feature: domain Description: SpoVG Location: 19684 6-197077 bp Feature: gene Location: 197272-197574 bp Feature: gene Location: 197650-199482 bp Ori: OXE64338.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197914-198745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197914 -19874 5 bp Feature: domain Description: Intron_maturas2 Location: 198817-199132 bp Feature: domain Description: Intron_maturas2 Location: 198817-199132 bp Feature: domain Description: HNHc Note: nucleases Location: 199279-199453 bp Feature: domain Description: HNHc Note: nucleases Location: 199279-1994 53 bp Feature: gene Location: 200058-200721 bp Feature: gene Location: 200728-200811 bp Feature: domain Description: Maff2 Location: 200731-200806 bp Feature: domain Description: Maff2 Location: 200731-200806 bp Feature: gene Location: 213173-213331 bp Ori: OXE64497.1 Feature: domain Description: Maff2 Location: 213176-213326 bp Feature: domain Description: Maff2 Location: 213176-213326 bp Feature: gene Location: 213573-214538 bp Ori: OXE64498.1 Feature: domain Description: TraG-D_C Location: 213966-214320 bp Feature: domain Description: TraG-D_C Location: 213966-214 320 bp Feature: gene Location: 214644-216443 bp Ori: OXE64355.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 214923-215631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 214 923-215631 bp Feature: domain Description: HNHc Note: nucleases Location: 216252-216357 bp Feature: domain Description: HNHc Note: nucleases Location: 216252-216357 bp Feature: gene Location: 217174-217722 bp Feature: domain Description: TraG_VirD4 Location: 217222-217693 bp Feature: domain Description: TraG_VirD4 Location: 217222-217693 bp Feature: gene Location: 217946-219838 bp Ori: OXE64356.1 Feature: domain Description: DnaG Location: 218105-218198 bp Feature: domain Description: DnaG Location: 218105-218198 bp Feature: domain Description: DUF3991 Location: 218282-218492 bp Feature: domain Description: DUF3991 Location: 218282-2184 92 bp Feature: domain Description: Toprim_2 Location: 218510-218774 bp Feature: domain Description: Toprim_2 Location: 218510-218774 bp Feature: domain Description: AAA_25 Location: 218867-219371 bp Feature: domain Description: AAA_25 Location: 218867-219371 bp Feature: gene Location: 360172-360471 bp Ori: OXE64466.1 Feature: domain Description: SAP Location: 360178-360265 bp Feature: domain Description: SAP Location: 360178-360265 bp Feature: gene Location: 360674-361924 bp Ori: OXE64467.1 Feature: domain Description: 2A0121 Location: 360710-361799 bp Feature: domain Description: 2A0121 Location: 360710-361799 bp Feature: gene Location: 362028-362414 bp Ori: OXE64468.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 362034-362394 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 362034 -362394 bp Feature: gene Location: 362452-363237 bp Ori: OXE64469.1 Feature: domain Description: DDE_3 Location: 362623-363148 bp Feature: domain Description: DDE_3 Location: 362623-36314 8 bp Feature: gene Location: 363207-363701 bp Ori: OXE64470.1 Feature: domain Description: HTH_29 Location: 363315-363417 bp Feature: domain Description: HTH_29 Location: 363315-3634 17 bp Feature: domain Description: HTH_32 Location: 363480-363690 bp Feature: domain Description: HTH_32 Location: 3634 80-363690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, T4SS-DNA_transf (pfam02534), lp_hng_hel_AbrB (TIGR01439), Tn7_Tnp_TnsA_N (pfam08722), Tn7_Tnp_TnsA_C (pfam08721), Spr (COG0791), HNHc (smart00507), TraC-F-type (TIGR02746), PrgI (pfam12666)
SpoVG (pfam04026), Intron_maturas2 (pfam01348), Maff2 (pfam12750), TraG_VirD4, DnaG (COG0358), DUF3991 (pfam13154), Toprim_2 (pfam13155), AAA_25 (pfam13481), SAP (smart00513), 2A0121 (TIGR00900)
RVT-Retrons, DDE_3 (pfam13358), HTH_29 (pfam13551), HTH_32 (pfam13565)

Seq: NHTR01000003.1 [Clostridium] clostridioforme strain YL32 NODE_3_length_835505_cov_87.5916_ID_23522, whole genome shotgun sequence (835505 bp)
Overview 1 RT 1: 346261-351345 bp 2 RT 2: 477397-482893 bp 3 RT 3: 683571-689506 bp Neighborhood of RT #1 [346261, 351632] TnpW T4SS-DNA_transf RVT-GII HNHc SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 Neighborhood of RT #2 [477397, 482919] RbsK F_bP_aldolase RVT-GII HNHc F_bP_aldolase Lyx_isomer Neighborhood of RT #3 [683571, 689517] RVT-GII HNHc Maff2 Feature: gene Location: 346261-346437 bp Ori: OXE67490.1 Feature: domain Description: TnpW Location: 346324-346423 bp Feature: domain Description: TnpW Location: 346324-346423 bp Feature: gene Location: 346470-346907 bp Feature: domain Description: T4SS-DNA_transf Location: 346593-346881 bp Feature: domain Description: T4SS-DNA_transf Location: 3465 93-346881 bp Feature: gene Location: 347614-349413 bp Ori: OXE67491.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347893-348601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347893-348601 bp Feature: domain Description: HNHc Note: nucleases Location: 349222-349327 bp Feature: domain Description: HNHc Note: nucleases Location: 349222-349327 bp Feature: gene Location: 349570-349677 bp Feature: gene Location: 349752-351632 bp Ori: OXE67492.1 Feature: domain Description: SR_TndX_transposase Location: 349776-350184 bp Feature: domain Description: SR_TndX_transposase Location: 349776-35 0184 bp Feature: domain Description: Recombinase Location: 350283-350643 bp Feature: domain Description: Recombinase Location: 35 0283-35 0643 bp Feature: domain Description: Zn_ribbon_recom Location: 350688-350871 bp Feature: domain Description: Zn_ribbon_recom Location: 35 0688-35 0871 bp Feature: domain Description: DUF4368 Location: 351150-351345 bp Feature: domain Description: DUF4368 Location: 35 115 0-35 1345 bp Feature: gene Location: 477397-478527 bp Ori: OXE67584.1 Feature: domain Description: RbsK Location: 477418-478501 bp Feature: domain Description: RbsK Location: 477418-4785 01 bp Feature: gene Location: 478656-479327 bp Feature: domain Description: F_bP_aldolase Location: 478665-479328 bp Feature: domain Description: F_bP_aldolase Location: 478665 -479328 bp Feature: gene Location: 480059-481858 bp Ori: OXE67585.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 480338-481046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 480338-481046 bp Feature: domain Description: HNHc Note: nucleases Location: 481667-481772 bp Feature: domain Description: HNHc Note: nucleases Location: 481667-481772 bp Feature: gene Location: 481951-482202 bp Ori: OXE67586.1 Feature: domain Description: F_bP_aldolase Location: 482017-482191 bp Feature: domain Description: F_bP_aldolase Location: 482017-482191 bp Feature: gene Location: 482224-482919 bp Ori: OXE67587.1 Feature: domain Description: Lyx_isomer Location: 482227-482893 bp Feature: domain Description: Lyx_isomer Location: 482227-482893 bp Feature: gene Location: 683571-683766 bp Feature: gene Location: 683732-685316 bp Feature: gene Location: 686383-688182 bp Ori: OXE67752.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 686662-687370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 686662-687370 bp Feature: domain Description: HNHc Note: nucleases Location: 687991-688096 bp Feature: domain Description: HNHc Note: nucleases Location: 687991-688096 bp Feature: gene Location: 688288-689144 bp Feature: gene Location: 689377-689517 bp Ori: OXE67753.1 Feature: domain Description: Maff2 Location: 689380-689506 bp Feature: domain Description: Maff2 Location: 689380-6895 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpW (pfam14202), T4SS-DNA_transf (pfam02534), RVT-GII, HNHc (smart00507), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), RbsK (COG0524), F_bP_aldolase (pfam01116)
Lyx_isomer (pfam07385), Maff2 (pfam12750)

Seq: NHTR01000011.1 [Clostridium] clostridioforme strain YL32 NODE_11_length_230387_cov_95.0116_ID_24135, whole genome shotgun sequence (230387 bp)
Overview 1 RT 1: 102884-115331 bp Neighborhood of RT #1 [102884, 115331] Peptidase_C70 RVT-GII Intron_maturas2 HNHc Peptidase_C39_2 TraC-F-type RVT-GII Intron_maturas2 Feature: gene Location: 102884-103876 bp Feature: gene Location: 103896-104075 bp Feature: domain Description: Peptidase_C70 Location: 103911-104007 bp Feature: domain Description: Peptidase_C70 Location: 103911-104007 bp Feature: gene Location: 104197-105984 bp Ori: OXE61975.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104473-105280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104473-105280 bp Feature: domain Description: Intron_maturas2 Location: 105346-105706 bp Feature: domain Description: Intron_maturas2 Location: 105346 -105706 bp Feature: domain Description: HNHc Note: nucleases Location: 105811-105964 bp Feature: domain Description: HNHc Note: nucleases Location: 105811-10596 4 bp Feature: gene Location: 106590-107258 bp Ori: OXE61976.1 Feature: domain Description: Peptidase_C39_2 Location: 106917-107232 bp Feature: domain Description: Peptidase_C39_2 Location: 106 917-107232 bp Feature: gene Location: 107258-109093 bp Ori: OXE61977.1 Feature: domain Description: TraC-F-type Location: 107930-108950 bp Feature: domain Description: TraC-F-type Location: 107930-108950 bp Feature: gene Location: 109086-109781 bp Feature: gene Location: 109785-110420 bp Feature: gene Location: 110563-112380 bp Ori: OXE61980.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110827-111658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110827-1116 58 bp Feature: domain Description: Intron_maturas2 Location: 111730-112036 bp Feature: domain Description: Intron_maturas2 Location: 111730-112036 bp Feature: gene Location: 112920-114644 bp Feature: gene Location: 114711-115331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_C70 (pfam12385), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Peptidase_C39_2 (pfam13529), TraC-F-type (TIGR02746)

Seq: NHTR01000014.1 [Clostridium] clostridioforme strain YL32 NODE_14_length_26695_cov_141.812_ID_24235, whole genome shotgun sequence (26695 bp)
Overview 1 RT 1: 111-17686 bp Neighborhood of RT #1 [111, 17754] Maff2 RVT-GII Intron_maturas2 HNHc PrgI VirB4_CagE TraC-F-type RVT-GII HNHc TraC-F-type N6_N4_Mtase 3D_containing_proteins RVT-GII HNHc Spr Tn7_Tnp_TnsA_N Tn7_Tnp_TnsA_C Feature: gene Location: 111-197 bp Ori: OXE61197.1 Feature: domain Description: Maff2 Location: 117-192 bp Feature: domain Description: Maff2 Location: 117 -192 bp Feature: gene Location: 215-887 bp Feature: gene Location: 1463-3295 bp Ori: OXE61198.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1727-2558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17 27 -2558 bp Feature: domain Description: Intron_maturas2 Location: 2630-2945 bp Feature: domain Description: Intron_maturas2 Location: 2630-2945 bp Feature: domain Description: HNHc Note: nucleases Location: 3092-3266 bp Feature: domain Description: HNHc Note: nucleases Location: 3092-3266 bp Feature: gene Location: 3371-3673 bp Feature: gene Location: 3686-4066 bp Ori: OXE61200.1 Feature: domain Description: PrgI Location: 3704-3968 bp Feature: domain Description: PrgI Location: 37 04-3968 bp Feature: gene Location: 4071-6533 bp Feature: domain Description: VirB4_CagE Location: 4605-5046 bp Feature: domain Description: VirB4_CagE Location: 4605-5046 bp Feature: domain Description: TraC-F-type Location: 5319-6435 bp Feature: domain Description: TraC-F-type Location: 5319-6435 bp Feature: gene Location: 7307-9232 bp Ori: OXE61201.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7625-8357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 625-8357 bp Feature: domain Description: HNHc Note: nucleases Location: 8972-9104 bp Feature: domain Description: HNHc Note: nucleases Location: 897 2-9104 bp Feature: gene Location: 9328-9705 bp Feature: domain Description: TraC-F-type Location: 9337-9526 bp Feature: domain Description: TraC-F-type Location: 9337 -9526 bp Feature: gene Location: 9744-10502 bp Ori: OXE61215.1 Feature: domain Description: N6_N4_Mtase Location: 9789-10464 bp Feature: domain Description: N6_N4_Mtase Location: 97 89-10464 bp Feature: gene Location: 11611-12903 bp Feature: gene Location: 12907-13749 bp Ori: OXE61205.1 Feature: domain Description: 3D_containing_proteins Location: 13108-13375 bp Feature: domain Description: 3D_containing_proteins Location: 13108-1337 5 bp Feature: gene Location: 14402-16360 bp Ori: OXE61206.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14738-15482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147 38-15482 bp Feature: domain Description: HNHc Note: nucleases Location: 16061-16202 bp Feature: domain Description: HNHc Note: nucleases Location: 16061-16202 bp Feature: gene Location: 16415-16783 bp Ori: OXE61207.1 Feature: domain Description: Spr Location: 16463-16766 bp Feature: domain Description: Spr Location: 16463-167 66 bp Feature: gene Location: 16942-17754 bp Ori: OXE61208.1 Feature: domain Description: Tn7_Tnp_TnsA_N Location: 17167-17437 bp Feature: domain Description: Tn7 _Tnp_TnsA_N Location: 17 167 -17 437 bp Feature: domain Description: Tn7_Tnp_TnsA_C Location: 17443-17686 bp Feature: domain Description: Tn7 _Tnp_TnsA_C Location: 17 443-17 686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PrgI (pfam12666), VirB4_CagE (TIGR00929), TraC-F-type (TIGR02746), N6_N4_Mtase (pfam01555), 3D_containing_proteins (cd14667), Spr (COG0791)
Tn7_Tnp_TnsA_N (pfam08722), Tn7_Tnp_TnsA_C (pfam08721)

Seq: NHTR01000002.1 [Clostridium] clostridioforme strain YL32 NODE_2_length_1071486_cov_87.3367_ID_21667, whole genome shotgun sequence (1071486 bp)
Overview 1 RT 1: 239483-243388 bp 2 RT 2: 1049085-1054890 bp Neighborhood of RT #1 [239483, 243388] SLC5sbd_u1 RVT-DGRs Avd_like Neighborhood of RT #2 [1049085, 1054910] PBP1_ABC_sugar_binding_like ROK RVT-GII HNHc MarR_2 NagC DUF3788 Feature: gene Location: 239483-239869 bp Ori: OXE68768.1 Feature: domain Description: SLC5sbd_u1 Location: 239519-239810 bp Feature: domain Description: SLC5sbd_u1 Location: 239519-2398 10 bp Feature: gene Location: 239866-240309 bp Feature: gene Location: 240236-241393 bp Ori: OXE68770.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 240446-241106 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 240446-241106 bp Feature: gene Location: 241832-242146 bp Ori: OXE69471.1 Feature: domain Description: Avd_like Location: 241838-242135 bp Feature: domain Description: Avd_like Location: 2418 38 -242135 bp Feature: gene Location: 242321-243388 bp Feature: gene Location: 1049085-1050134 bp Ori: OXE69441.1 Feature: domain Description: PBP1_ABC_sugar_binding_like Location: 1049292-1050078 bp Feature: domain Description: PBP1_ABC_sugar_binding_like Location: 1049292-1050078 bp Feature: gene Location: 1050357-1050932 bp Feature: domain Description: ROK Location: 1050363-1050876 bp Feature: domain Description: ROK Location: 1050363-10508 76 bp Feature: gene Location: 1051092-1052891 bp Ori: OXE69442.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1051371-1052079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1051371-1052079 bp Feature: domain Description: HNHc Note: nucleases Location: 1052700-1052805 bp Feature: domain Description: HNHc Note: nucleases Location: 1052700-10528 05 bp Feature: gene Location: 1053619-1054254 bp Feature: domain Description: MarR_2 Location: 1053673-1053808 bp Feature: domain Description: MarR_2 Location: 1053673-10538 08 bp Feature: domain Description: NagC Location: 1053859-1054237 bp Feature: domain Description: NagC Location: 10538 59-1054237 bp Feature: gene Location: 1054407-1054910 bp Ori: OXE69443.1 Feature: domain Description: DUF3788 Location: 1054509-1054890 bp Feature: domain Description: DUF378 8 Location: 1054509-10548 90 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLC5sbd_u1 (cd11477), RVT-DGRs, Avd_like (cd16376), PBP1_ABC_sugar_binding_like, ROK (pfam00480), RVT-GII, HNHc (smart00507), MarR_2 (pfam12802), NagC (COG1940), DUF3788 (pfam12663)

Seq: NHTR01000005.1 [Clostridium] clostridioforme strain YL32 NODE_5_length_563091_cov_84.8808_ID_23435, whole genome shotgun sequence (563091 bp)
Overview 1 RT 1: 515045-524782 bp 2 RT 2: 535043-539034 bp 3 RT 3: 541613-546824 bp Neighborhood of RT #1 [515045, 524790] GntR AgaS RVT-GII GIIM Phage_int_SAM_1 INT_RitA_C_like xerS INT_RitC_C_like xerS Phage_int_SAM_1 INT_RitA_C_like INT_RitC_C_like RVT-GII HNHc YozG TnpV Neighborhood of RT #2 [535043, 539183] Maff2 RVT-GII Intron_maturas2 HNHc SpoVG Neighborhood of RT #3 [541613, 546829] VirB4_CagE RVT-GII UgpE Feature: gene Location: 515045-515722 bp Ori: OXE65398.1 Feature: domain Description: GntR Location: 515084-515702 bp Feature: domain Description: GntR Location: 515084-515702 bp Feature: gene Location: 515942-516910 bp Ori: OXE65399.1 Feature: domain Description: AgaS Location: 515963-516908 bp Feature: domain Description: AgaS Location: 5159 63-5169 08 bp Feature: gene Location: 516990-517664 bp Ori: OXE65400.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 516996-517212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5169 9 6-517212 bp Feature: domain Description: GIIM Note: maturase Location: 517269-517488 bp Feature: domain Description: GIIM Note: maturase Location: 517269 -517488 bp Feature: gene Location: 517820-518893 bp Feature: domain Description: Phage_int_SAM_1 Location: 518192-518408 bp Feature: domain Description: Phage_int_SAM_1 Location: 51819 2-518408 bp Feature: domain Description: INT_RitA_C_like Location: 518489-518894 bp Feature: domain Description: INT_RitA_C_like Location: 518489 -51889 4 bp Feature: gene Location: 518986-520017 bp Ori: OXE65401.1 Feature: domain Description: xerS Location: 518995-519283 bp Feature: domain Description: xerS Location: 5189 9 5-519 283 bp Feature: domain Description: INT_RitC_C_like Location: 519364-519922 bp Feature: domain Description: INT_RitC_C_like Location: 519 364-519 9 22 bp Feature: gene Location: 520969-522207 bp Ori: OXE65403.1 Feature: domain Description: xerS Location: 521020-521188 bp Feature: domain Description: xerS Location: 521020-521188 bp Feature: domain Description: Phage_int_SAM_1 Location: 521329-521560 bp Feature: domain Description: Phage_int_SAM_1 Location: 521329 -521560 bp Feature: domain Description: INT_RitA_C_like Location: 521641-522181 bp Feature: domain Description: INT_RitA_C_like Location: 521641-522181 bp Feature: gene Location: 522383-522583 bp Ori: OXE65478.1 Feature: domain Description: INT_RitC_C_like Location: 522386-522506 bp Feature: domain Description: INT_RitC_C_like Location: 522386-522506 bp Feature: gene Location: 522689-523849 bp Ori: OXE65404.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 522692-523040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52269 2-523040 bp Feature: domain Description: HNHc Note: nucleases Location: 523580-523736 bp Feature: domain Description: HNHc Note: nucleases Location: 523580-523736 bp Feature: gene Location: 524181-524453 bp Ori: OXE65405.1 Feature: domain Description: YozG Location: 524190-524391 bp Feature: domain Description: YozG Location: 52419 0-52439 1 bp Feature: gene Location: 524413-524790 bp Ori: OXE65406.1 Feature: domain Description: TnpV Location: 524458-524782 bp Feature: domain Description: TnpV Location: 524458-524782 bp Feature: gene Location: 535043-535126 bp Ori: OXE65420.1 Feature: domain Description: Maff2 Location: 535049-535124 bp Feature: domain Description: Maff2 Location: 535049 -535124 bp Feature: gene Location: 535136-535726 bp Feature: gene Location: 536378-538210 bp Ori: OXE65421.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 536642-537473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 536642-537473 bp Feature: domain Description: Intron_maturas2 Location: 537545-537860 bp Feature: domain Description: Intron_maturas2 Location: 537545-537860 bp Feature: domain Description: HNHc Note: nucleases Location: 538007-538181 bp Feature: domain Description: HNHc Note: nucleases Location: 538007-538181 bp Feature: gene Location: 538286-538588 bp Feature: gene Location: 538638-539183 bp Ori: OXE65423.1 Feature: domain Description: SpoVG Location: 538800-539034 bp Feature: domain Description: SpoVG Location: 538800-539 034 bp Feature: gene Location: 541613-543742 bp Ori: OXE65427.1 Feature: domain Description: VirB4_CagE Location: 542360-543704 bp Feature: domain Description: VirB4_CagE Location: 542360-543704 bp Feature: gene Location: 543818-544027 bp Feature: gene Location: 544236-544883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 544503-544881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 544503-544881 bp Feature: gene Location: 544883-545565 bp Feature: gene Location: 546005-546829 bp Ori: OXE65429.1 Feature: domain Description: UgpE Location: 546020-546824 bp Feature: domain Description: UgpE Location: 546020-546824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GntR (pfam00392), AgaS (COG2222), RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), xerS (PRK05084), INT_RitC_C_like (cd01182), HNHc (smart00507), YozG (COG3655)
TnpV (pfam14198), Maff2 (pfam12750), Intron_maturas2 (pfam01348), SpoVG (pfam04026), VirB4_CagE (TIGR00929), UgpE (COG0395)

Seq: NHTR01000001.1 [Clostridium] clostridioforme strain YL32 NODE_1_length_1846036_cov_77.2334_ID_24359, whole genome shotgun sequence (1846036 bp)
Overview 1 RT 1: 81308-87185 bp 2 RT 2: 166346-171842 bp 3 RT 3: 571046-579693 bp 4 RT 4: 1599095-1603701 bp 5 RT 5: 1709559-1713100 bp Neighborhood of RT #1 [81308, 87190] DUF3801 TraG_VirD4 RVT-GII HNHc VirD4 Maff2 Neighborhood of RT #2 [166346, 171901] DUF772 RVT_N RVT-GII GIIM ArdC Neighborhood of RT #3 [571046, 579779] HisM GlnQ RVT-GII HNHc gyrB GyrA Neighborhood of RT #4 [1599095, 1603701] DUF3848 DUF3849 RVT_N RVT-GII GIIM Neighborhood of RT #5 [1709559, 1713100] XerC RVT-GII Intron_maturas2 HNHc Feature: gene Location: 81308-81838 bp Ori: OXE69973.1 Feature: domain Description: DUF3801 Location: 81458-81821 bp Feature: domain Description: DUF3801 Location: 81458-81821 bp Feature: gene Location: 81907-82878 bp Ori: OXE71373.1 Feature: domain Description: TraG_VirD4 Location: 82351-82813 bp Feature: domain Description: TraG_VirD4 Location: 82351-82813 bp Feature: gene Location: 83585-85384 bp Ori: OXE69974.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83864-84572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83864-84572 bp Feature: domain Description: HNHc Note: nucleases Location: 85193-85298 bp Feature: domain Description: HNHc Note: nucleases Location: 85193-85298 bp Feature: gene Location: 85490-86488 bp Ori: OXE71374.1 Feature: domain Description: VirD4 Location: 85547-86336 bp Feature: domain Description: VirD4 Location: 85547-86336 bp Feature: gene Location: 86975-87190 bp Ori: OXE69975.1 Feature: domain Description: Maff2 Location: 86978-87185 bp Feature: domain Description: Maff2 Location: 86978-87185 bp Feature: gene Location: 166346-166555 bp Feature: gene Location: 166723-168180 bp Ori: OXE70035.1 Feature: domain Description: DUF772 Location: 166912-167095 bp Feature: domain Description: DUF772 Location: 166912-167095 bp Feature: gene Location: 168355-170025 bp Ori: OXE70036.1 Feature: domain Description: RVT_N Location: 168400-168643 bp Feature: domain Description: RVT_N Location: 168400-168643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168688-169333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168688-169333 bp Feature: domain Description: GIIM Note: maturase Location: 169390-169621 bp Feature: domain Description: GIIM Note: maturase Location: 169390-169621 bp Feature: gene Location: 170110-171091 bp Feature: gene Location: 171143-171901 bp Ori: OXE71377.1 Feature: domain Description: ArdC Location: 171353-171842 bp Feature: domain Description: ArdC Location: 171353-171842 bp Feature: gene Location: 571046-571726 bp Ori: OXE70364.1 Feature: domain Description: HisM Location: 571064-571718 bp Feature: domain Description: HisM Location: 5710 64-571718 bp Feature: gene Location: 571716-572426 bp Ori: OXE70365.1 Feature: domain Description: GlnQ Location: 571731-572406 bp Feature: domain Description: GlnQ Location: 571731-572406 bp Feature: gene Location: 573133-574932 bp Ori: OXE70366.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 573412-574120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 573412-574120 bp Feature: domain Description: HNHc Note: nucleases Location: 574741-574846 bp Feature: domain Description: HNHc Note: nucleases Location: 574741-574846 bp Feature: gene Location: 575607-577526 bp Ori: OXE70367.1 Feature: domain Description: gyrB Location: 575616-577518 bp Feature: domain Description: gyrB Location: 575616-577518 bp Feature: gene Location: 577545-579779 bp Ori: OXE70368.1 Feature: domain Description: GyrA Location: 577557-579693 bp Feature: domain Description: GyrA Location: 577557-579693 bp Feature: gene Location: 1599095-1600192 bp Feature: domain Description: DUF3848 Location: 1599116-1599392 bp Feature: domain Description: DUF3848 Location: 1599116-1599392 bp Feature: domain Description: DUF3849 Location: 1599440-1599818 bp Feature: domain Description: DUF3849 Location: 1599440-1599818 bp Feature: gene Location: 1600249-1600896 bp Feature: gene Location: 1600991-1602661 bp Feature: domain Description: RVT_N Location: 1601036-1601279 bp Feature: domain Description: RVT_N Location: 16010 36-1601279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1601324-1601969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1601324-1601969 bp Feature: domain Description: GIIM Note: maturase Location: 1602026-1602257 bp Feature: domain Description: GIIM Note: maturase Location: 1602026-1602257 bp Feature: gene Location: 1603242-1603427 bp Feature: gene Location: 1603393-1603701 bp Feature: gene Location: 1709559-1710731 bp Ori: OXE71245.1 Feature: domain Description: XerC Location: 1709709-1710687 bp Feature: domain Description: XerC Location: 1709709-1710 687 bp Feature: gene Location: 1710815-1711036 bp Feature: gene Location: 1711332-1712459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1711515-1711731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1711515-1711731 bp Feature: domain Description: Intron_maturas2 Location: 1711809-1712142 bp Feature: domain Description: Intron_maturas2 Location: 1711809-1712142 bp Feature: domain Description: HNHc Note: nucleases Location: 1712280-1712430 bp Feature: domain Description: HNHc Note: nucleases Location: 1712280-1712430 bp Feature: gene Location: 1712453-1712758 bp Feature: gene Location: 1712864-1713100 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), TraG_VirD4, RVT-GII, HNHc (smart00507), VirD4 (COG3505), Maff2 (pfam12750), DUF772 (pfam05598), RVT_N (pfam13655), GIIM (pfam08388), ArdC (COG4227)
HisM (COG0765), GlnQ (COG1126), gyrB (TIGR01059), GyrA (COG0188), DUF3848 (pfam12959), DUF3849 (pfam12960), XerC (COG4973), Intron_maturas2 (pfam01348)