myRT

myRT report for GCA_002221595.1_ASM222159v1

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Seq: NHMP01000002.1 Turicimonas muris strain YL45 NODE_2_length_445785_cov_182.862_ID_5999, whole genome shotgun sequence (445785 bp)
Overview 1 RT 1: 223254-231050 bp 2 RT 2: 308238-316411 bp 3 RT 3: 341107-343637 bp Neighborhood of RT #1 [223254, 231079] DcuC M20_peptT RVT-GII GIIM Cytochrome_C554 Cytochrome_C7 Cytochrome_C7 RHOD Neighborhood of RT #2 [308238, 316419] MFS_MdtG_MDR_like Autotransporter RVT-GII GIIM M20_Acy1_amhX-like PRK05399 Neighborhood of RT #3 [341107, 343696] RVT-GII GIIM PRK13304 ABC_PstB_phosphate_transporter Feature: gene Location: 223254-224540 bp Ori: OXE50235.1 Feature: domain Description: DcuC Location: 223278-224532 bp Feature: domain Description: DcuC Location: 223278-224532 bp Feature: gene Location: 224800-226053 bp Ori: OXE50414.1 Feature: domain Description: M20_peptT Location: 224833-226024 bp Feature: domain Description: M20_peptT Location: 224833-226024 bp Feature: gene Location: 226668-227993 bp Ori: OXE50236.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226890-227514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226890-22751 4 bp Feature: domain Description: GIIM Note: maturase Location: 227601-227832 bp Feature: domain Description: GIIM Note: maturase Location: 227601 -227832 bp Feature: gene Location: 228534-230591 bp Ori: OXE50237.1 Feature: domain Description: Cytochrome_C554 Location: 228966-229032 bp Feature: domain Description: Cytochrome_C554 Location: 228966-229032 bp Feature: domain Description: Cytochrome_C7 Location: 229428-229632 bp Feature: domain Description: Cytochrome_C7 Location: 229428-229632 bp Feature: domain Description: Cytochrome_C7 Location: 229761-229947 bp Feature: domain Description: Cytochrome_C7 Location: 229761 -229947 bp Feature: gene Location: 230654-231079 bp Ori: OXE50238.1 Feature: domain Description: RHOD Location: 230798-231050 bp Feature: domain Description: RHOD Location: 230798-231 050 bp Feature: gene Location: 308238-309365 bp Ori: OXE50420.1 Feature: domain Description: MFS_MdtG_MDR_like Location: 308247-309339 bp Feature: domain Description: MFS_MdtG_MDR_like Location: 308247-309339 bp Feature: gene Location: 309502-310428 bp Ori: OXE50299.1 Feature: domain Description: Autotransporter Location: 309688-310321 bp Feature: domain Description: Autotransporter Location: 309688-31 0321 bp Feature: gene Location: 311087-312412 bp Ori: OXE50300.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 311309-311933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 309-31 1 933 bp Feature: domain Description: GIIM Note: maturase Location: 312020-312251 bp Feature: domain Description: GIIM Note: maturase Location: 31 2020-31 2251 bp Feature: gene Location: 312617-313723 bp Ori: OXE50301.1 Feature: domain Description: M20_Acy1_amhX-like Location: 312632-313709 bp Feature: domain Description: M20_Acy1 _amhX-like Location: 31 2632-31 3709 bp Feature: gene Location: 313780-316419 bp Ori: OXE50302.1 Feature: domain Description: PRK05399 Location: 313831-316411 bp Feature: domain Description: PRK05399 Location: 31 3831 -31 641 1 bp Feature: gene Location: 341107-341829 bp Ori: OXE50318.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341110-341398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341 1 1 0-341 398 bp Feature: domain Description: GIIM Note: maturase Location: 341446-341665 bp Feature: domain Description: GIIM Note: maturase Location: 341 446-341 665 bp Feature: gene Location: 341965-342765 bp Ori: OXE50319.1 Feature: domain Description: PRK13304 Location: 341968-342754 bp Feature: domain Description: PRK1 3304 Location: 341 968-342754 bp Feature: gene Location: 342956-343696 bp Ori: OXE50320.1 Feature: domain Description: ABC_PstB_phosphate_transporter Location: 342971-343637 bp Feature: domain Description: ABC_PstB_phosphate_transporter Location: 342971 -343637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), M20_peptT (cd03892), RVT-GII, GIIM (pfam08388), Cytochrome_C554 (pfam13435), Cytochrome_C7 (pfam14522), RHOD (smart00450), MFS_MdtG_MDR_like (cd17391), Autotransporter (smart00869), M20_Acy1_amhX-like (cd08018)
PRK05399 (DNA mismatch repair protein MutS; Provisional), PRK13304 (aspartate dehydrogenase), ABC_PstB_phosphate_transporter (cd03260)

Seq: NHMP01000003.1 Turicimonas muris strain YL45 NODE_3_length_339048_cov_189.134_ID_5525, whole genome shotgun sequence (339048 bp)
Overview 1 RT 1: 18705-22797 bp Neighborhood of RT #1 [18705, 22802] COG5421 RVT-GII GIIM KorB_C Feature: gene Location: 18705-19238 bp Feature: gene Location: 19462-20487 bp Feature: domain Description: COG5421 Location: 19990-20404 bp Feature: domain Description: COG542 1 Location: 19990-2 0404 bp Feature: gene Location: 20690-22081 bp Ori: OXE49575.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21017-21641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1017-2 1641 bp Feature: domain Description: GIIM Note: maturase Location: 21704-21923 bp Feature: domain Description: GIIM Note: maturase Location: 2 1704-2 192 3 bp Feature: gene Location: 22253-22480 bp Feature: gene Location: 22479-22802 bp Ori: OXE49577.1 Feature: domain Description: KorB_C Location: 22647-22797 bp Feature: domain Description: KorB_C Location: 2 2 647-2 2 797 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5421 (Transposase ), RVT-GII, GIIM (pfam08388), KorB_C (pfam06613)

Seq: NHMP01000009.1 Turicimonas muris strain YL45 NODE_9_length_102763_cov_216.637_ID_3296, whole genome shotgun sequence (102763 bp)
Overview 1 RT 1: 31021-35383 bp 2 RT 2: 42780-49136 bp Neighborhood of RT #1 [31021, 35409] TnpB_IS66 RVT-GII GIIM flavo_cyto_c Cytochrom_c3_2 Neighborhood of RT #2 [42780, 49136] Cytochrom_NNT gram_neg_porins RVT-GII GIIM NPD_like Feature: gene Location: 31021-31377 bp Ori: OXE45484.1 Feature: domain Description: TnpB_IS66 Location: 31051-31348 bp Feature: domain Description: TnpB_IS66 Location: 3 1051-3 13 48 bp Feature: gene Location: 31374-31664 bp Feature: gene Location: 31710-33002 bp Ori: OXE45486.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31944-32562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 1944-3 2562 bp Feature: domain Description: GIIM Note: maturase Location: 32610-32835 bp Feature: domain Description: GIIM Note: maturase Location: 3 2610-3 283 5 bp Feature: gene Location: 33559-35094 bp Ori: OXE45487.1 Feature: domain Description: flavo_cyto_c Location: 33691-35068 bp Feature: domain Description: flavo_cyto_c Location: 3 3 691-3 5068 bp Feature: gene Location: 35098-35409 bp Ori: OXE45488.1 Feature: domain Description: Cytochrom_c3_2 Location: 35212-35383 bp Feature: domain Description: Cytochrom_c3 _2 Location: 3 5212-3 53 83 bp Feature: gene Location: 42780-43769 bp Ori: OXE45497.1 Feature: domain Description: Cytochrom_NNT Location: 42792-43329 bp Feature: domain Description: Cytochrom_NNT Location: 42792-43 3 29 bp Feature: gene Location: 43851-45161 bp Ori: OXE45498.1 Feature: domain Description: gram_neg_porins Location: 44118-45111 bp Feature: domain Description: gram_neg_porins Location: 44118-45111 bp Feature: gene Location: 45546-46922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45780-46398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45780-463 98 bp Feature: domain Description: GIIM Note: maturase Location: 46446-46668 bp Feature: domain Description: GIIM Note: maturase Location: 46446-46668 bp Feature: gene Location: 47566-48783 bp Ori: OXE45499.1 Feature: domain Description: NPD_like Location: 47617-48679 bp Feature: domain Description: NPD_like Location: 47617-48679 bp Feature: gene Location: 48945-49136 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, GIIM (pfam08388), flavo_cyto_c (TIGR01813), Cytochrom_c3_2 (pfam14537), Cytochrom_NNT (pfam03264), gram_neg_porins (cd00342), NPD_like (cd04730)

Seq: NHMP01000006.1 Turicimonas muris strain YL45 NODE_6_length_148032_cov_191.647_ID_4420, whole genome shotgun sequence (148032 bp)
Overview 1 RT 1: 135519-141908 bp Neighborhood of RT #1 [135519, 141916] HybA NrfD RVT-GII GIIM MopB_Thiosulfate-R-like PRK14991 HybA Feature: gene Location: 135519-136097 bp Ori: OXE46040.1 Feature: domain Description: HybA Location: 135531-136089 bp Feature: domain Description: HybA Location: 135531-136089 bp Feature: gene Location: 136094-136981 bp Ori: OXE46041.1 Feature: domain Description: NrfD Location: 136127-136967 bp Feature: domain Description: NrfD Location: 136127-136967 bp Feature: gene Location: 137887-138198 bp Ori: OXE46042.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137896-137974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137896-137974 bp Feature: domain Description: GIIM Note: maturase Location: 138046-138172 bp Feature: domain Description: GIIM Note: maturase Location: 13804 6-138172 bp Feature: gene Location: 138807-141335 bp Ori: OXE46043.1 Feature: domain Description: MopB_Thiosulfate-R-like Location: 138918-140850 bp Feature: domain Description: MopB_Thiosulfate-R-like Location: 138918-14 0850 bp Feature: domain Description: PRK14991 Location: 141024-141165 bp Feature: domain Description: PRK14 991 Location: 14 1024 -14 1165 bp Feature: gene Location: 141338-141916 bp Ori: OXE46044.1 Feature: domain Description: HybA Location: 141350-141908 bp Feature: domain Description: HybA Location: 14 1350-14 1908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HybA (COG0437), NrfD (pfam03916), RVT-GII, GIIM (pfam08388), MopB_Thiosulfate-R-like (cd02755), PRK14991 (tetrathionate reductase subunit TtrA)