myRT

myRT report for GCA_002221655.1_ASM222165v1

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Seq: NHMT01000001.1 Lactobacillus reuteri strain I49 NODE_1_length_2045096_cov_277.453_ID_449, whole genome shotgun sequence (2045096 bp)
Overview 1 RT 1: 34420-41025 bp 2 RT 2: 383976-390505 bp 3 RT 3: 492308-497967 bp 4 RT 4: 1070499-1082551 bp 5 RT 5: 1093715-1101084 bp 6 RT 6: 1260483-1267785 bp 7 RT 7: 1339269-1344984 bp 8 RT 8: 1485823-1489625 bp 9 RT 9: 1594157-1600920 bp 10 RT 10: 1711920-1716619 bp 11 RT 11: 1813166-1818997 bp Neighborhood of RT #1 [34420, 41027] SLC-NCS1sbd_CobB-like YegV_kinase_like RVT-CRISPR-like RVT-CRISPR-like MazE Neighborhood of RT #2 [383976, 390507] PRK12736 RVT-GII GIIM RnjA rpsO Neighborhood of RT #3 [492308, 497967] PulF PulE RVT-GII GIIM PRK00110 Neighborhood of RT #4 [1070499, 1082685] addA_Gpos addA_Gpos addB_Gpos RVT-GII GIIM bac_cardiolipin Acetyltransf_1 Neighborhood of RT #5 [1093715, 1101116] bacteriocin_ABC RVT-GII GIIM LytT DUF3290 HATPase_AgrC-ComD-like Neighborhood of RT #6 [1260483, 1267976] DacC DUF915 RVT-GII GIIM gldA MdoB Neighborhood of RT #7 [1339269, 1345010] DedA gltP RVT-GII GIIM HTH_ASNC Tra8 Neighborhood of RT #8 [1485823, 1489645] RelB_DinJ SpoU RVT-GII GIIM PRK13690 Neighborhood of RT #9 [1594157, 1600952] DacC RVT-GII galactose_mutarotase_like DUF2252 Neighborhood of RT #10 [1711920, 1716627] Nitroreductase AdaB RVT-GII GIIM PGRP DUF3021 Neighborhood of RT #11 [1813166, 1819080] INT_C_like_3 HTH_38 RVT-GII GIIM MFS_LmrB_MDR_like PRK09263 Feature: gene Location: 34420-35793 bp Ori: OXE59100.1 Feature: domain Description: SLC-NCS1sbd_CobB-like Location: 34450-35764 bp Feature: domain Description: SLC-NCS1 sbd_CobB-like Location: 34450-35764 bp Feature: gene Location: 35790-36671 bp Ori: OXE59101.1 Feature: domain Description: YegV_kinase_like Location: 35808-36657 bp Feature: domain Description: YegV_kinase_like Location: 35808-36657 bp Feature: gene Location: 37226-38686 bp Ori: OXE59102.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 37466-37757 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 37466-37757 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 37934-38210 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 37934-3821 0 bp Feature: gene Location: 39159-40586 bp Feature: gene Location: 40779-41027 bp Ori: OXE59104.1 Feature: domain Description: MazE Location: 40791-41025 bp Feature: domain Description: MazE Location: 40791 -41 025 bp Feature: gene Location: 383976-385166 bp Ori: OXE59410.1 Feature: domain Description: PRK12736 Location: 383985-385161 bp Feature: domain Description: PRK1 2736 Location: 383985-3851 61 bp Feature: gene Location: 385345-386250 bp Feature: gene Location: 386381-387763 bp Ori: OXE59412.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386699-387314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386699-38731 4 bp Feature: domain Description: GIIM Note: maturase Location: 387371-387599 bp Feature: domain Description: GIIM Note: maturase Location: 387371 -387599 bp Feature: gene Location: 388276-390057 bp Ori: OXE59413.1 Feature: domain Description: RnjA Location: 388285-389926 bp Feature: domain Description: RnjA Location: 388285-389926 bp Feature: gene Location: 390238-390507 bp Ori: OXE59414.1 Feature: domain Description: rpsO Location: 390241-390505 bp Feature: domain Description: rpsO Location: 390241 -390505 bp Feature: gene Location: 492308-493378 bp Ori: OXE59505.1 Feature: domain Description: PulF Location: 492380-493367 bp Feature: domain Description: PulF Location: 492380-493367 bp Feature: gene Location: 493296-494273 bp Ori: OXE59506.1 Feature: domain Description: PulE Location: 493332-494115 bp Feature: domain Description: PulE Location: 493332-4941 1 5 bp Feature: gene Location: 494419-495801 bp Ori: OXE59507.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 494737-495352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 494737-495352 bp Feature: domain Description: GIIM Note: maturase Location: 495409-495637 bp Feature: domain Description: GIIM Note: maturase Location: 495409-495637 bp Feature: gene Location: 496301-497047 bp Ori: OXE59508.1 Feature: domain Description: PRK00110 Location: 496304-497030 bp Feature: domain Description: PRK001 1 0 Location: 496304-497030 bp Feature: gene Location: 497122-497967 bp Feature: gene Location: 1070499-1074677 bp Ori: OXE59999.1 Feature: domain Description: addA_Gpos Location: 1070520-1071501 bp Feature: domain Description: addA_Gpos Location: 1 070520-1 071 501 bp Feature: domain Description: addA_Gpos Location: 1071513-1074651 bp Feature: domain Description: addA_Gpos Location: 1 071 51 3-1 074651 bp Feature: gene Location: 1074677-1078459 bp Ori: OXE60000.1 Feature: domain Description: addB_Gpos Location: 1074689-1078442 bp Feature: domain Description: addB_Gpos Location: 1 074689-1 078442 bp Feature: gene Location: 1078621-1080003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1078939-1079554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 078939-1 079554 bp Feature: domain Description: GIIM Note: maturase Location: 1079611-1079839 bp Feature: domain Description: GIIM Note: maturase Location: 1 07961 1 -1 079839 bp Feature: gene Location: 1080498-1081961 bp Ori: OXE60001.1 Feature: domain Description: bac_cardiolipin Location: 1080519-1081959 bp Feature: domain Description: bac_cardiolipin Location: 1 08051 9-1 081 959 bp Feature: gene Location: 1082059-1082685 bp Ori: OXE60002.1 Feature: domain Description: Acetyltransf_1 Location: 1082206-1082551 bp Feature: domain Description: Acetyltransf_1 Location: 1 082206-1 082551 bp Feature: gene Location: 1093715-1093900 bp Feature: gene Location: 1093942-1096083 bp Ori: OXE60011.1 Feature: domain Description: bacteriocin_ABC Location: 1093975-1096078 bp Feature: domain Description: bacteriocin_ABC Location: 1 093975-1 096078 bp Feature: gene Location: 1097146-1098528 bp Ori: OXE60012.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1097464-1098079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 097464-1 098079 bp Feature: domain Description: GIIM Note: maturase Location: 1098136-1098364 bp Feature: domain Description: GIIM Note: maturase Location: 1 0981 36-1 098364 bp Feature: gene Location: 1099028-1099795 bp Ori: OXE60013.1 Feature: domain Description: LytT Location: 1099103-1099781 bp Feature: domain Description: LytT Location: 1 0991 03-1 099781 bp Feature: gene Location: 1099803-1101116 bp Ori: OXE60014.1 Feature: domain Description: DUF3290 Location: 1100289-1100517 bp Feature: domain Description: DUF3290 Location: 1 1 00289-1 1 0051 7 bp Feature: domain Description: HATPase_AgrC-ComD-like Location: 1100706-1101084 bp Feature: domain Description: HATPase_AgrC-ComD-like Location: 1 1 00706-1 1 01 084 bp Feature: gene Location: 1260483-1261694 bp Ori: OXE60157.1 Feature: domain Description: DacC Location: 1260510-1261686 bp Feature: domain Description: DacC Location: 1 26051 0-1 261 686 bp Feature: gene Location: 1261762-1262616 bp Ori: OXE60158.1 Feature: domain Description: DUF915 Location: 1261846-1262614 bp Feature: domain Description: DUF91 5 Location: 1 261 846-1 26261 4 bp Feature: gene Location: 1263101-1264483 bp Ori: OXE60159.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263419-1264034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 26341 9-1 264034 bp Feature: domain Description: GIIM Note: maturase Location: 1264091-1264319 bp Feature: domain Description: GIIM Note: maturase Location: 1 264091 -1 26431 9 bp Feature: gene Location: 1264567-1265688 bp Ori: OXE60160.1 Feature: domain Description: gldA Location: 1264573-1265659 bp Feature: domain Description: gldA Location: 1 264573-1 265659 bp Feature: gene Location: 1265847-1267976 bp Ori: OXE60161.1 Feature: domain Description: MdoB Location: 1265859-1267785 bp Feature: domain Description: MdoB Location: 1 265859-1 267785 bp Feature: gene Location: 1339269-1339880 bp Ori: OXE60227.1 Feature: domain Description: DedA Location: 1339272-1339872 bp Feature: domain Description: DedA Location: 1 339272-1 339872 bp Feature: gene Location: 1340130-1341443 bp Ori: OXE60228.1 Feature: domain Description: gltP Location: 1340154-1341405 bp Feature: domain Description: gltP Location: 1 3401 54-1 341 405 bp Feature: gene Location: 1341940-1343322 bp Ori: OXE60229.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1342258-1342873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 342258-1 342873 bp Feature: domain Description: GIIM Note: maturase Location: 1342930-1343158 bp Feature: domain Description: GIIM Note: maturase Location: 1 342930-1 3431 58 bp Feature: gene Location: 1343407-1343877 bp Ori: OXE60230.1 Feature: domain Description: HTH_ASNC Location: 1343410-1343725 bp Feature: domain Description: HTH_ASNC Location: 1 34341 0-1 343725 bp Feature: gene Location: 1344042-1345010 bp Ori: OXE60231.1 Feature: domain Description: Tra8 Location: 1344045-1344984 bp Feature: domain Description: Tra8 Location: 1 344045-1 344984 bp Feature: gene Location: 1485823-1486035 bp Ori: OXE60359.1 Feature: domain Description: RelB_DinJ Location: 1485862-1485955 bp Feature: domain Description: RelB_DinJ Location: 1 485862-1 485955 bp Feature: gene Location: 1486117-1486989 bp Ori: OXE60360.1 Feature: domain Description: SpoU Location: 1486219-1486975 bp Feature: domain Description: SpoU Location: 1 48621 9-1 486975 bp Feature: gene Location: 1487078-1488460 bp Ori: OXE60361.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1487396-1488011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 487396-1 48801 1 bp Feature: domain Description: GIIM Note: maturase Location: 1488068-1488296 bp Feature: domain Description: GIIM Note: maturase Location: 1 488068-1 488296 bp Feature: gene Location: 1488859-1489064 bp Feature: gene Location: 1489067-1489645 bp Ori: OXE60362.1 Feature: domain Description: PRK13690 Location: 1489088-1489625 bp Feature: domain Description: PRK1 3690 Location: 1 489088-1 489625 bp Feature: gene Location: 1594157-1595401 bp Ori: OXE60424.1 Feature: domain Description: DacC Location: 1594190-1595390 bp Feature: domain Description: DacC Location: 1 5941 90-1 595390 bp Feature: gene Location: 1595725-1596165 bp Feature: gene Location: 1596663-1598046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1596981-1597596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 596981 -1 597596 bp Feature: gene Location: 1598148-1599185 bp Ori: OXE60426.1 Feature: domain Description: galactose_mutarotase_like Location: 1598202-1599174 bp Feature: domain Description: galactose_mutarotase_like Location: 1 598202-1 5991 74 bp Feature: gene Location: 1599555-1600952 bp Ori: OXE60427.1 Feature: domain Description: DUF2252 Location: 1599738-1600920 bp Feature: domain Description: DUF2252 Location: 1 599738-1 600920 bp Feature: gene Location: 1711920-1712573 bp Ori: OXE60535.1 Feature: domain Description: Nitroreductase Location: 1711932-1712559 bp Feature: domain Description: Nitroreductase Location: 1 71 1 932-1 71 2559 bp Feature: gene Location: 1712588-1713037 bp Feature: domain Description: AdaB Location: 1712606-1713026 bp Feature: domain Description: AdaB Location: 1 71 2606-1 71 3026 bp Feature: gene Location: 1713532-1714914 bp Ori: OXE60536.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1713850-1714465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 3850-1 71 4465 bp Feature: domain Description: GIIM Note: maturase Location: 1714522-1714750 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 4522-1 71 4750 bp Feature: gene Location: 1715250-1716173 bp Ori: OXE60537.1 Feature: domain Description: PGRP Location: 1715688-1716078 bp Feature: domain Description: PGRP Location: 1 71 5688-1 71 6078 bp Feature: gene Location: 1716181-1716627 bp Ori: OXE60538.1 Feature: domain Description: DUF3021 Location: 1716202-1716619 bp Feature: domain Description: DUF3021 Location: 1 71 6202-1 71 661 9 bp Feature: gene Location: 1813166-1813630 bp Ori: OXE60855.1 Feature: domain Description: INT_C_like_3 Location: 1813250-1813592 bp Feature: domain Description: INT_C_like_3 Location: 1 81 3250-1 81 3592 bp Feature: gene Location: 1813607-1813970 bp Feature: domain Description: HTH_38 Location: 1813652-1813778 bp Feature: domain Description: HTH_38 Location: 1 81 3652-1 81 3778 bp Feature: gene Location: 1813946-1814965 bp Ori: OXE60613.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1813952-1814516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 3952-1 81 451 6 bp Feature: domain Description: GIIM Note: maturase Location: 1814573-1814801 bp Feature: domain Description: GIIM Note: maturase Location: 1 81 4573-1 81 4801 bp Feature: gene Location: 1815034-1816440 bp Ori: OXE60614.1 Feature: domain Description: MFS_LmrB_MDR_like Location: 1815097-1816417 bp Feature: domain Description: MFS_LmrB_MDR_like Location: 1 81 5097-1 81 641 7 bp Feature: gene Location: 1816846-1819080 bp Ori: OXE60615.1 Feature: domain Description: PRK09263 Location: 1816897-1818997 bp Feature: domain Description: PRK09263 Location: 1 81 6897-1 81 8997 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLC-NCS1sbd_CobB-like (cd11484), YegV_kinase_like (cd01944), RVT-CRISPR, MazE (COG2336), PRK12736 (elongation factor Tu; Reviewed), RVT-GII, GIIM (pfam08388), RnjA (COG0595), rpsO (PRK05626), PulF (COG1459)
PulE (COG2804), PRK00110 (YebC/PmpR family DNA-binding transcriptional regulator), addA_Gpos (TIGR02785), addB_Gpos (TIGR02773), bac_cardiolipin (TIGR04265), Acetyltransf_1 (pfam00583), bacteriocin_ABC (TIGR01193), LytT (COG3279), DUF3290 (pfam11694), HATPase_AgrC-ComD-like (cd16935)
DacC (COG1686), DUF915 (pfam06028), gldA (PRK09423), MdoB (COG1368), DedA (COG0586), gltP (PRK11283), HTH_ASNC (smart00344), Tra8 (COG2826), RelB_DinJ (TIGR02384), SpoU (COG0566)
PRK13690 (hypothetical protein; Provisional), galactose_mutarotase_like (cd09019), DUF2252 (pfam10009), Nitroreductase (pfam00881), AdaB (COG0350), PGRP (smart00701), DUF3021 (pfam11457), INT_C_like_3 (cd01192), HTH_38 (pfam13936), MFS_LmrB_MDR_like (cd17503)
PRK09263 (anaerobic ribonucleoside triphosphate reductase; Provisional)