myRT

myRT report for GCA_002221665.1_ASM222166v1

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Seq: NHMU01000002.1 Bacteroides caecimuris strain I48 NODE_2_length_708662_cov_93.8747_ID_2896, whole genome shotgun sequence (708662 bp)
Overview 1 RT 1: 149316-152696 bp 2 RT 2: 228698-235099 bp 3 RT 3: 267788-273405 bp 4 RT 4: 380672-395137 bp Neighborhood of RT #1 [149316, 152788] COG3943 RVT-Retrons HTH_17 Neighborhood of RT #2 [228698, 235455] INT_RitA_C_like COG4646 RVT_N RVT-GII GIIM RutR Neighborhood of RT #3 [267788, 273443] DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Neighborhood of RT #4 [380672, 395139] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons GlnA3 Feature: gene Location: 149316-149681 bp Feature: domain Description: COG3943 Location: 149355-149613 bp Feature: domain Description: COG3943 Location: 1 49355-1 4961 3 bp Feature: gene Location: 149947-150828 bp Feature: gene Location: 150859-151716 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 151021-151546 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 51 021 -1 51 546 bp Feature: gene Location: 151742-151963 bp Feature: gene Location: 152423-152788 bp Feature: domain Description: HTH_17 Location: 152558-152696 bp Feature: domain Description: HTH_1 7 Location: 1 52558-1 52696 bp Feature: gene Location: 228698-229909 bp Feature: domain Description: INT_RitA_C_like Location: 229331-229865 bp Feature: domain Description: INT_RitA_C_like Location: 229331 -229865 bp Feature: gene Location: 230051-231070 bp Feature: domain Description: COG4646 Location: 230054-230687 bp Feature: domain Description: COG4646 Location: 230054-230687 bp Feature: gene Location: 231729-233414 bp Feature: RT Description: RVT_N Location: 231801-232044 bp Feature: RT Description: RVT_N Location: 231 801 -232044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232089-232737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232089-232737 bp Feature: domain Description: GIIM Note: maturase Location: 232791-233022 bp Feature: domain Description: GIIM Note: maturase Location: 232791 -233022 bp Feature: gene Location: 233416-234696 bp Feature: gene Location: 234844-235455 bp Feature: domain Description: RutR Location: 234856-235099 bp Feature: domain Description: RutR Location: 234856-235099 bp Feature: gene Location: 267788-268120 bp Feature: domain Description: DUF4133 Location: 267806-268076 bp Feature: domain Description: DUF41 33 Location: 267806-268076 bp Feature: gene Location: 268117-270144 bp Feature: domain Description: Bac_Flav_CT_G Location: 268120-270145 bp Feature: domain Description: Bac_Flav_CT_G Location: 2681 20-2701 45 bp Feature: gene Location: 270774-272429 bp Feature: RT Description: RVT_N Location: 270828-271071 bp Feature: RT Description: RVT_N Location: 270828-271 071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271116-271764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 1 1 6-271 764 bp Feature: domain Description: GIIM Note: maturase Location: 271815-272049 bp Feature: domain Description: GIIM Note: maturase Location: 271 81 5-272049 bp Feature: gene Location: 272432-273022 bp Feature: domain Description: Bac_Flav_CT_G Location: 272549-273005 bp Feature: domain Description: Bac_Flav_CT_G Location: 272549-273005 bp Feature: gene Location: 273081-273443 bp Feature: domain Description: DUF3876 Location: 273138-273405 bp Feature: domain Description: DUF3876 Location: 2731 38-273405 bp Feature: gene Location: 380672-382471 bp Feature: domain Description: rpsA Location: 380741-382346 bp Feature: domain Description: rpsA Location: 380741 -382346 bp Feature: gene Location: 382568-388600 bp Feature: domain Description: DUF4011 Location: 383798-384311 bp Feature: domain Description: DUF401 1 Location: 383798-38431 1 bp Feature: domain Description: DEXXQc_SF1 Location: 384650-385079 bp Feature: domain Description: DEXXQc_SF1 Location: 384650-385079 bp Feature: domain Description: DEXXQc_SF1 Location: 386078-386837 bp Feature: domain Description: DEXXQc_SF1 Location: 386078-386837 bp Feature: domain Description: TIGR00376 Location: 386966-387356 bp Feature: domain Description: TIGR00376 Location: 386966-387356 bp Feature: domain Description: MTES_1575 Location: 387509-387794 bp Feature: domain Description: MTES_1 575 Location: 387509-387794 bp Feature: domain Description: DUF3320 Location: 388115-388250 bp Feature: domain Description: DUF3320 Location: 3881 1 5-388250 bp Feature: gene Location: 388637-389767 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 388958-389501 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 388958-389501 bp Feature: gene Location: 389973-392162 bp Feature: gene Location: 392950-395139 bp Feature: domain Description: GlnA3 Location: 393022-395137 bp Feature: domain Description: GlnA3 Location: 393022-3951 37 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-Retrons, HTH_17 (pfam12728), INT_RitA_C_like (cd01188), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), RutR (TIGR03613), DUF4133 (pfam13571)
Bac_Flav_CT_G (TIGR03783), DUF3876 (pfam12992), rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), GlnA3 (COG3968)

Seq: NHMU01000004.1 Bacteroides caecimuris strain I48 NODE_4_length_566447_cov_113.015_ID_10790, whole genome shotgun sequence (566447 bp)
Overview 1 RT 1: 274547-278580 bp 2 RT 2: 433851-440378 bp 3 RT 3: 540471-547936 bp Neighborhood of RT #1 [274547, 278600] TraO Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N Neighborhood of RT #2 [433851, 441025] AbiEii TraG-D_C RVT_N RVT-GII GIIM YWFCY HTH_23 COG4584 Neighborhood of RT #3 [540471, 547936] PRTRC_parB RVT_N RVT-GII GIIM COG4646 Feature: gene Location: 274547-275122 bp Feature: domain Description: TraO Location: 274622-275117 bp Feature: domain Description: TraO Location: 2 7462 2 -2 75117 bp Feature: gene Location: 275125-275850 bp Feature: domain Description: Bac_Flav_CT_N Location: 275266-275827 bp Feature: domain Description: Bac_Flav_CT_N Location: 2 752 66-2 7582 7 bp Feature: gene Location: 275822-277633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276086-276908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 76086-2 76908 bp Feature: domain Description: Intron_maturas2 Location: 276980-277289 bp Feature: domain Description: Intron_maturas2 Location: 2 76980-2 772 89 bp Feature: gene Location: 277668-278156 bp Feature: gene Location: 278175-278600 bp Feature: domain Description: Bac_Flav_CT_N Location: 278178-278580 bp Feature: domain Description: Bac_Flav_CT_N Location: 2 78178-2 78580 bp Feature: gene Location: 433851-434867 bp Feature: domain Description: AbiEii Location: 433962-434787 bp Feature: domain Description: AbiEii Location: 433962 -434787 bp Feature: gene Location: 434913-436319 bp Feature: domain Description: TraG-D_C Location: 435693-436026 bp Feature: domain Description: TraG-D_C Location: 435693-43602 6 bp Feature: gene Location: 436322-437986 bp Feature: RT Description: RVT_N Location: 436376-436616 bp Feature: RT Description: RVT_N Location: 436376-436616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 436664-437318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 436664-437318 bp Feature: domain Description: GIIM Note: maturase Location: 437372-437603 bp Feature: domain Description: GIIM Note: maturase Location: 437372 -437603 bp Feature: gene Location: 438617-439327 bp Feature: domain Description: YWFCY Location: 438671-438794 bp Feature: domain Description: YWFCY Location: 438671-438794 bp Feature: gene Location: 439460-441025 bp Feature: domain Description: HTH_23 Location: 439469-439595 bp Feature: domain Description: HTH_2 3 Location: 439469-439595 bp Feature: domain Description: COG4584 Location: 439721-440378 bp Feature: domain Description: COG4584 Location: 43972 1-440378 bp Feature: gene Location: 540471-542192 bp Feature: domain Description: PRTRC_parB Location: 540546-541323 bp Feature: domain Description: PRTRC_parB Location: 540546-54132 3 bp Feature: gene Location: 542953-544038 bp Feature: gene Location: 544022-545707 bp Feature: RT Description: RVT_N Location: 544094-544337 bp Feature: RT Description: RVT_N Location: 544094-544337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 544382-545030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 544382 -545030 bp Feature: domain Description: GIIM Note: maturase Location: 545084-545315 bp Feature: domain Description: GIIM Note: maturase Location: 545084-545315 bp Feature: gene Location: 546366-547376 bp Feature: domain Description: COG4646 Location: 546375-546759 bp Feature: domain Description: COG4646 Location: 546375-546759 bp Feature: gene Location: 547643-547936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraO (pfam10626), Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348), AbiEii (pfam08843), TraG-D_C (pfam12696), RVT_N (pfam13655), GIIM (pfam08388), YWFCY (pfam14293), HTH_23 (pfam13384)
COG4584 (Transposase ), PRTRC_parB (TIGR03734), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: NHMU01000003.1 Bacteroides caecimuris strain I48 NODE_3_length_603765_cov_109.858_ID_10016, whole genome shotgun sequence (603765 bp)
Overview 1 RT 1: 535932-541062 bp Neighborhood of RT #1 [535932, 541136] Cupin_2 HxlR RVT-GII UT DAO Feature: gene Location: 535932-536381 bp Feature: domain Description: Cupin_2 Location: 536100-536307 bp Feature: domain Description: Cupin_2 Location: 53 6100-53 63 07 bp Feature: gene Location: 536566-536949 bp Feature: domain Description: HxlR Location: 536587-536929 bp Feature: domain Description: HxlR Location: 53 6587-53 6929 bp Feature: gene Location: 537059-538166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 537269-537455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 7269-53 7455 bp Feature: gene Location: 539047-539907 bp Feature: domain Description: UT Location: 539077-539881 bp Feature: domain Description: UT Location: 53 9077-53 9881 bp Feature: gene Location: 539910-541136 bp Feature: domain Description: DAO Location: 540000-541062 bp Feature: domain Description: DAO Location: 540000-541062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cupin_2 (pfam07883), HxlR (pfam01638), RVT-GII, UT (pfam03253), DAO (pfam01266)

Seq: NHMU01000001.1 Bacteroides caecimuris strain I48 NODE_1_length_803037_cov_111.3_ID_7825, whole genome shotgun sequence (803037 bp)
Overview 1 RT 1: 576960-580896 bp Neighborhood of RT #1 [576960, 580896] RVT-DGRs Feature: gene Location: 576960-577244 bp Feature: gene Location: 577247-578608 bp Feature: gene Location: 578941-580128 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 579274-579901 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 579274 -579901 bp Feature: gene Location: 580091-580519 bp Feature: gene Location: 580516-580896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: NHMU01000006.1 Bacteroides caecimuris strain I48 NODE_6_length_351885_cov_110.895_ID_10971, whole genome shotgun sequence (351885 bp)
Overview 1 RT 1: 61406-65283 bp Neighborhood of RT #1 [61406, 65288] DUF3791 RVT-GII GIIM TIGR00043 SpmA SpmB Feature: gene Location: 61406-61621 bp Feature: domain Description: DUF3791 Location: 61430-61607 bp Feature: domain Description: DUF3791 Location: 61430-61607 bp Feature: gene Location: 61716-61961 bp Feature: gene Location: 62047-63453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62389-63007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62389-63007 bp Feature: domain Description: GIIM Note: maturase Location: 63064-63292 bp Feature: domain Description: GIIM Note: maturase Location: 63064-63292 bp Feature: gene Location: 63620-64039 bp Feature: domain Description: TIGR00043 Location: 63731-64028 bp Feature: domain Description: TIGR00043 Location: 63731-64028 bp Feature: gene Location: 64056-65288 bp Feature: domain Description: SpmA Location: 64065-64665 bp Feature: domain Description: SpmA Location: 64065 -64665 bp Feature: domain Description: SpmB Location: 64800-65283 bp Feature: domain Description: SpmB Location: 64800-65 283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3791 (pfam12668), RVT-GII, GIIM (pfam08388), TIGR00043 (rRNA maturation RNase YbeY), SpmA (COG2715), SpmB (COG0700)

Seq: NHMU01000007.1 Bacteroides caecimuris strain I48 NODE_7_length_289415_cov_104.904_ID_6355, whole genome shotgun sequence (289415 bp)
Overview 1 RT 1: 142007-147977 bp Neighborhood of RT #1 [142007, 147977] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 142007-142339 bp Feature: domain Description: DUF4133 Location: 142025-142292 bp Feature: domain Description: DUF4133 Location: 142025-142292 bp Feature: gene Location: 142336-144429 bp Feature: domain Description: Bac_Flav_CT_G Location: 142339-144418 bp Feature: domain Description: Bac_Flav_CT_G Location: 142339-144418 bp Feature: gene Location: 144980-146791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145244-146066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145244-146 06 6 bp Feature: domain Description: Intron_maturas2 Location: 146138-146468 bp Feature: domain Description: Intron_maturas2 Location: 146 138-146 46 8 bp Feature: domain Description: HNHc Note: nucleases Location: 146612-146762 bp Feature: domain Description: HNHc Note: nucleases Location: 146 6 12-146 76 2 bp Feature: gene Location: 146869-147336 bp Feature: domain Description: Bac_Flav_CT_G Location: 146896-147313 bp Feature: domain Description: Bac_Flav_CT_G Location: 146 896 -147313 bp Feature: gene Location: 147357-147977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)