myRT

myRT report for GCA_002223005.1_ASM222300v1

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Seq: NIIB01000122.1 Escherichia coli strain FC11884 Scaffold9, whole genome shotgun sequence (166287 bp)
Overview 1 RT 1: 137496-143605 bp Neighborhood of RT #1 [137496, 143664] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase SfsB Feature: gene Location: 137496-138416 bp Ori: OXJ60651.1 Feature: domain Description: AbiEii Location: 137538-138279 bp Feature: domain Description: AbiEii Location: 1 37538-1 38279 bp Feature: gene Location: 138403-139206 bp Ori: OXJ60652.1 Feature: domain Description: AbiEi_3_N Location: 138436-138697 bp Feature: domain Description: AbiEi_3_N Location: 1 38436-1 38697 bp Feature: domain Description: AbiEi_3 Location: 138709-139165 bp Feature: domain Description: AbiEi_3 Location: 1 38709-1 391 65 bp Feature: gene Location: 139501-142710 bp Ori: OXJ60653.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 140029-140518 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 40029-1 4051 8 bp Feature: domain Description: nitrilase Location: 142024-142621 bp Feature: domain Description: nitrilase Location: 1 42024-1 42621 bp Feature: gene Location: 143057-143527 bp Feature: gene Location: 143524-143664 bp Ori: OXJ60655.1 Feature: domain Description: SfsB Location: 143533-143605 bp Feature: domain Description: SfsB Location: 1 43533-1 43605 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), SfsB (COG3423)

Seq: NIIB01000086.1 Escherichia coli strain FC11884 Scaffold57, whole genome shotgun sequence (15745 bp)
Overview 1 RT 1: 8316-11429 bp Neighborhood of RT #1 [8316, 11429] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 8316-8510 bp Feature: gene Location: 8491-8724 bp Feature: gene Location: 8786-10453 bp Ori: OXJ63838.1 Gene: ltrA Feature: domain Description: RVT_N Location: 8834-9071 bp Feature: domain Description: RVT_N Location: 8834-9071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9122-9764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 912 2 -9764 bp Feature: domain Description: GIIM Note: maturase Location: 9815-10049 bp Feature: domain Description: GIIM Note: maturase Location: 9815-10049 bp Feature: domain Description: HNHc Note: nucleases Location: 10259-10418 bp Feature: domain Description: HNHc Note: nucleases Location: 102 59-10418 bp Feature: gene Location: 10996-11184 bp Feature: gene Location: 11235-11429 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NIIB01000127.1 Escherichia coli strain FC11884 Scaffold94, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2272 bp Neighborhood of RT #1 [93, 2272] RVT-GII GIIM Feature: gene Location: 93-1616 bp Ori: OXJ60256.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 66-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173 -13 71 bp Feature: gene Location: 1687-1995 bp Feature: gene Location: 1910-2272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NIIB01000085.1 Escherichia coli strain FC11884 Scaffold56, whole genome shotgun sequence (16513 bp)
Overview 1 RT 1: 10138-14120 bp Neighborhood of RT #1 [10138, 14146] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 10138-11142 bp Ori: OXJ63855.1 Feature: domain Description: Asparaginase_2 Location: 10201-11134 bp Feature: domain Description: Asparaginase_2 Location: 10201-11134 bp Feature: gene Location: 11327-11529 bp Feature: gene Location: 11577-12139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11883-11985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11883-11985 bp Feature: gene Location: 12364-12570 bp Feature: gene Location: 12785-14146 bp Ori: OXJ63852.1 Feature: domain Description: DcuC Location: 12788-14120 bp Feature: domain Description: DcuC Location: 12788-14 120 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)

Seq: NIIB01000100.1 Escherichia coli strain FC11884 Scaffold7, whole genome shotgun sequence (181013 bp)
Overview 1 RT 1: 127944-132235 bp Neighborhood of RT #1 [127944, 132235] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 127944-129173 bp Ori: OXJ62250.1 Feature: domain Description: YesM Location: 128424-129165 bp Feature: domain Description: YesM Location: 128424-129165 bp Feature: gene Location: 129246-129434 bp Feature: gene Location: 129756-130277 bp Ori: OXJ62252.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129762-130044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129762-130044 bp Feature: domain Description: GIIM Note: maturase Location: 130092-130272 bp Feature: domain Description: GIIM Note: maturase Location: 130092-130272 bp Feature: gene Location: 130305-130844 bp Ori: OXJ62253.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130635-130713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130635 -130713 bp Feature: gene Location: 131069-131356 bp Feature: gene Location: 131330-132235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)