myRT

myRT report for GCA_002223405.1_ASM222340v1

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Seq: NIIE01000006.1 Escherichia coli strain FC10274 Scaffold4_1, whole genome shotgun sequence (295752 bp)
Overview 1 RT 1: 80424-86491 bp Neighborhood of RT #1 [80424, 86511] PRK09692 RVT-UG3 RVT-UG8 PRK09678 Psu Feature: gene Location: 80424-80576 bp Feature: gene Location: 80851-82029 bp Ori: OXJ83057.1 Feature: domain Description: PRK09692 Location: 80857-82015 bp Feature: domain Description: PRK09692 Location: 80857-8201 5 bp Feature: gene Location: 82031-83227 bp Ori: OXJ83058.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 82316-82778 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 8231 6-82778 bp Feature: gene Location: 83231-85234 bp Ori: OXJ83059.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 83726-84173 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 83726-841 73 bp Feature: gene Location: 85683-85955 bp Ori: OXJ83060.1 Feature: domain Description: PRK09678 Location: 85692-85860 bp Feature: domain Description: PRK09678 Location: 85692-85860 bp Feature: gene Location: 85957-86511 bp Ori: OXJ83061.1 Feature: domain Description: Psu Location: 85981-86491 bp Feature: domain Description: Psu Location: 85981 -86491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG3, RVT-UG8, PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455)

Seq: NIIE01000029.1 Escherichia coli strain FC10274 Scaffold26_1, whole genome shotgun sequence (58539 bp)
Overview 1 RT 1: 8520-12179 bp Neighborhood of RT #1 [8520, 12181] RVT_N RVT-GII GIIM HNHc PRK13732 Feature: gene Location: 8520-8618 bp Feature: gene Location: 8656-8841 bp Feature: gene Location: 8819-10486 bp Ori: OXJ78789.1 Gene: ltrA Feature: domain Description: RVT_N Location: 8867-9104 bp Feature: domain Description: RVT_N Location: 8867-9104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9155-9797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9155-9797 bp Feature: domain Description: GIIM Note: maturase Location: 9848-10082 bp Feature: domain Description: GIIM Note: maturase Location: 9848-10082 bp Feature: domain Description: HNHc Note: nucleases Location: 10292-10451 bp Feature: domain Description: HNHc Note: nucleases Location: 102 92 -10451 bp Feature: gene Location: 11451-11657 bp Feature: gene Location: 11654-12181 bp Ori: OXJ78791.1 Feature: domain Description: PRK13732 Location: 11657-12179 bp Feature: domain Description: PRK13732 Location: 11657-12 179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional)