myRT

myRT report for GCA_002223465.1_ASM222346v1

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Seq: NIIM01000033.1 Escherichia coli strain FC10249 Scaffold39, whole genome shotgun sequence (32747 bp)
Overview 1 RT 1: 8926-14892 bp Neighborhood of RT #1 [8926, 14892] umuC PRK10276 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 8926-10197 bp Ori: OXK19180.1 Feature: domain Description: umuC Location: 8929-10189 bp Feature: domain Description: umuC Location: 8929-1 01 89 bp Feature: gene Location: 10197-10616 bp Ori: OXK19181.1 Feature: domain Description: PRK10276 Location: 10236-10602 bp Feature: domain Description: PRK1 0276 Location: 1 0236-1 0602 bp Feature: gene Location: 10974-12875 bp Ori: OXK19182.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11241-12072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 241 -1 2072 bp Feature: domain Description: Intron_maturas2 Location: 12186-12444 bp Feature: domain Description: Intron_maturas2 Location: 1 21 86-1 2444 bp Feature: domain Description: HNHc Note: nucleases Location: 12618-12780 bp Feature: domain Description: HNHc Note: nucleases Location: 1 261 8-1 2780 bp Feature: gene Location: 13058-13411 bp Feature: gene Location: 14296-14892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NIIM01000002.1 Escherichia coli strain FC10249 Scaffold10, whole genome shotgun sequence (155325 bp)
Overview 1 RT 1: 50559-54439 bp Neighborhood of RT #1 [50559, 54444] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 50559-51014 bp Ori: OXK23853.1 Feature: domain Description: dut Location: 50562-51009 bp Feature: domain Description: dut Location: 50562 -51009 bp Feature: gene Location: 51121-51717 bp Ori: OXK23755.1 Feature: domain Description: slmA Location: 51127-51703 bp Feature: domain Description: slmA Location: 5112 7-51703 bp Feature: gene Location: 51763-52722 bp Ori: OXK23756.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51898-52447 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51898-52 447 bp Feature: gene Location: 53020-53661 bp Ori: OXK23757.1 Feature: domain Description: pyrE Location: 53023-53656 bp Feature: domain Description: pyrE Location: 5302 3-53656 bp Feature: gene Location: 53728-54444 bp Ori: OXK23758.1 Feature: domain Description: rph Location: 53731-54439 bp Feature: domain Description: rph Location: 53731-54439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NIIM01000067.1 Escherichia coli strain FC10249 Scaffold7, whole genome shotgun sequence (184914 bp)
Overview 1 RT 1: 181459-184687 bp Neighborhood of RT #1 [181459, 184914] PRK10597 SLATT_5 RVT-UG17 Peptidase_S74 Feature: gene Location: 181459-181707 bp Ori: OXK15945.1 Feature: domain Description: PRK10597 Location: 181462-181702 bp Feature: domain Description: PRK10597 Location: 181462-181702 bp Feature: gene Location: 181930-182481 bp Ori: OXK15946.1 Feature: domain Description: SLATT_5 Location: 181936-182452 bp Feature: domain Description: SLATT_5 Location: 18193 6-182452 bp Feature: gene Location: 182459-183829 bp Ori: OXK15947.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 182687-183293 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 182687-183 293 bp Feature: gene Location: 183929-184144 bp Feature: gene Location: 184267-184914 bp Ori: OXK15954.1 Feature: domain Description: Peptidase_S74 Location: 184540-184687 bp Feature: domain Description: Peptidase_S74 Location: 184540-184687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10597 (DNA damage-inducible protein I; Provisional), SLATT_5 (pfam18160), RVT-UG17, Peptidase_S74 (pfam13884)