myRT

myRT report for GCA_002223475.1_ASM222347v1

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Seq: NIII01000026.1 Escherichia coli strain FC10257 Scaffold19, whole genome shotgun sequence (123429 bp)
Overview 1 RT 1: 462-5202 bp Neighborhood of RT #1 [462, 5204] Caudo_TAP SR_ResInv RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 462-731 bp Feature: domain Description: Caudo_TAP Location: 555-720 bp Feature: domain Description: Caudo_TAP Location: 555-720 bp Feature: gene Location: 762-992 bp Feature: domain Description: SR_ResInv Location: 792-912 bp Feature: domain Description: SR_ResInv Location: 792-91 2 bp Feature: gene Location: 1176-2780 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1467-2058 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 467-2058 bp Feature: domain Description: TIR_2 Location: 2385-2718 bp Feature: domain Description: TIR_2 Location: 2385-271 8 bp Feature: gene Location: 3138-3398 bp Feature: domain Description: PRK10597 Location: 3141-3381 bp Feature: domain Description: PRK1 0597 Location: 31 41 -3381 bp Feature: gene Location: 3618-5204 bp Feature: domain Description: prfC Location: 3636-5202 bp Feature: domain Description: prfC Location: 3636-5202 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503), Caudo_TAP (pfam02413), SR_ResInv (cd03768)

Seq: NIII01000041.1 Escherichia coli strain FC10257 Scaffold32, whole genome shotgun sequence (22010 bp)
Overview 1 RT 1: 1-3667 bp Neighborhood of RT #1 [1, 3667] PRK15417 IMP_DIM-like_MBL-B1 RVT-GII GIIM MobC Feature: gene Location: 1-218 bp Feature: domain Description: PRK15417 Location: 4-217 bp Feature: domain Description: PRK15417 Location: 4-2 17 bp Feature: gene Location: 371-1111 bp Feature: domain Description: IMP_DIM-like_MBL-B1 Location: 443-1064 bp Feature: domain Description: IMP_DIM-like_MBL-B1 Location: 443-1064 bp Feature: gene Location: 1201-2550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1483-2101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1483-2 101 bp Feature: domain Description: GIIM Note: maturase Location: 2149-2353 bp Feature: domain Description: GIIM Note: maturase Location: 2 149-2 353 bp Feature: gene Location: 3287-3553 bp Feature: domain Description: MobC Location: 3338-3458 bp Feature: domain Description: MobC Location: 3338-3458 bp Feature: gene Location: 3512-3667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK15417 (integron integrase), IMP_DIM-like_MBL-B1 (cd16301)

Seq: NIII01000002.1 Escherichia coli strain FC10257 Scaffold10, whole genome shotgun sequence (187344 bp)
Overview 1 RT 1: 80244-85142 bp Neighborhood of RT #1 [80244, 85142] RVT-Retrons Feature: gene Location: 80244-80474 bp Feature: gene Location: 80689-80928 bp Feature: gene Location: 81499-83256 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 81643-82261 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 81643 -82261 bp Feature: gene Location: 83503-84630 bp Feature: gene Location: 84627-85142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: NIII01000064.1 Escherichia coli strain FC10257 Scaffold53, whole genome shotgun sequence (5303 bp)
Overview 1 RT 1: 1348-4404 bp Neighborhood of RT #1 [1348, 4442] RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1348-1719 bp Feature: gene Location: 1634-1942 bp Feature: gene Location: 2013-3536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2286-3018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2286-3018 bp Feature: domain Description: GIIM Note: maturase Location: 3093-3291 bp Feature: domain Description: GIIM Note: maturase Location: 3093-3291 bp Feature: gene Location: 3620-3961 bp Feature: domain Description: PHA02517 Location: 3623-3959 bp Feature: domain Description: PHA02517 Location: 3623-3959 bp Feature: gene Location: 4038-4442 bp Feature: domain Description: InsE Location: 4068-4404 bp Feature: domain Description: InsE Location: 4 068-4 4 04 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: NIII01000079.1 Escherichia coli strain FC10257 Scaffold67, whole genome shotgun sequence (2233 bp)
Overview 1 RT 1: 711-1974 bp Neighborhood of RT #1 [711, 2233] RVT_N RVT-GII GIIM Feature: gene Location: 711-2233 bp Feature: RT Description: RVT_N Location: 759-996 bp Feature: RT Description: RVT_N Location: 75 9-996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1047-1689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1047-1689 bp Feature: domain Description: GIIM Note: maturase Location: 1740-1974 bp Feature: domain Description: GIIM Note: maturase Location: 1740-1974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)