myRT

myRT report for GCA_002223485.1_ASM222348v1

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Seq: NIIQ01000076.1 Escherichia coli strain FC10244 Scaffold75_1, whole genome shotgun sequence (7692 bp)
Overview 1 RT 1: 1688-5655 bp Neighborhood of RT #1 [1688, 5655] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1688-1921 bp Ori: OXK37008.1 Feature: domain Description: DUF905 Location: 1718-1916 bp Feature: domain Description: DUF905 Location: 1 71 8-1 91 6 bp Feature: gene Location: 1989-2486 bp Ori: OXK37009.1 Feature: domain Description: PRK13732 Location: 1992-2484 bp Feature: domain Description: PRK1 3732 Location: 1 992-2484 bp Feature: gene Location: 2636-4537 bp Ori: OXK37010.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2903-3734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2903-3734 bp Feature: domain Description: Intron_maturas2 Location: 3848-4106 bp Feature: domain Description: Intron_maturas2 Location: 3848-41 06 bp Feature: domain Description: HNHc Note: nucleases Location: 4280-4442 bp Feature: domain Description: HNHc Note: nucleases Location: 4280-4442 bp Feature: gene Location: 5215-5421 bp Feature: gene Location: 5423-5655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NIIQ01000008.1 Escherichia coli strain FC10244 Scaffold8_1, whole genome shotgun sequence (162933 bp)
Overview 1 RT 1: 127708-133817 bp Neighborhood of RT #1 [127708, 133876] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase SfsB Feature: gene Location: 127708-128628 bp Ori: OXK42421.1 Feature: domain Description: AbiEii Location: 127750-128491 bp Feature: domain Description: AbiEii Location: 12 7750-12 8491 bp Feature: gene Location: 128615-129418 bp Ori: OXK42422.1 Feature: domain Description: AbiEi_3_N Location: 128648-128909 bp Feature: domain Description: AbiEi_3_N Location: 12 8648-12 8909 bp Feature: domain Description: AbiEi_3 Location: 128921-129377 bp Feature: domain Description: AbiEi_3 Location: 12 892 1-12 9377 bp Feature: gene Location: 129713-132922 bp Ori: OXK42423.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 130241-130730 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1302 41-130730 bp Feature: domain Description: nitrilase Location: 132236-132833 bp Feature: domain Description: nitrilase Location: 132 2 36-132 833 bp Feature: gene Location: 133269-133739 bp Feature: gene Location: 133736-133876 bp Ori: OXK42425.1 Feature: domain Description: SfsB Location: 133745-133817 bp Feature: domain Description: SfsB Location: 133745-133817 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), SfsB (COG3423)