myRT

myRT report for GCA_002223545.1_ASM222354v1

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Seq: NIIU01000149.1 Escherichia coli strain FC10208 Scaffold72, whole genome shotgun sequence (13398 bp)
Overview 1 RT 1: 3862-7312 bp Neighborhood of RT #1 [3862, 7413] RVT_N RVT-GII GIIM HNHc AdoMet_MTases Feature: gene Location: 3862-4056 bp Feature: gene Location: 4107-4295 bp Feature: gene Location: 4838-6505 bp Ori: OXK56591.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4886-5123 bp Feature: domain Description: RVT_N Location: 4886-51 23 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5174-5816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 74-581 6 bp Feature: domain Description: GIIM Note: maturase Location: 5867-6101 bp Feature: domain Description: GIIM Note: maturase Location: 5867-61 01 bp Feature: domain Description: HNHc Note: nucleases Location: 6311-6470 bp Feature: domain Description: HNHc Note: nucleases Location: 631 1 -6470 bp Feature: gene Location: 6483-6869 bp Feature: gene Location: 6850-7413 bp Ori: OXK56592.1 Feature: domain Description: AdoMet_MTases Location: 7012-7312 bp Feature: domain Description: AdoMet_MTases Location: 701 2-731 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), AdoMet_MTases (cl17173)

Seq: NIIU01000133.1 Escherichia coli strain FC10208 Scaffold58, whole genome shotgun sequence (21788 bp)
Overview 1 RT 1: 199-4777 bp Neighborhood of RT #1 [199, 4785] HTH_XRE RVT-Retrons FRG Q Feature: gene Location: 199-492 bp Feature: gene Location: 529-849 bp Ori: OXK58898.1 Feature: domain Description: HTH_XRE Location: 544-703 bp Feature: domain Description: HTH_XRE Location: 544-703 bp Feature: gene Location: 815-1765 bp Ori: OXK58899.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 995-1538 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 995-1538 bp Feature: gene Location: 1874-3238 bp Ori: OXK58900.1 Feature: domain Description: FRG Location: 2441-2726 bp Feature: domain Description: FRG Location: 2 441-2 72 6 bp Feature: gene Location: 3751-4785 bp Ori: OXK58901.1 Feature: domain Description: Q Location: 3754-4777 bp Feature: domain Description: Q Location: 3754-4777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, FRG (smart00901), Q (PHA02536)

Seq: NIIU01000124.1 Escherichia coli strain FC10208 Scaffold5, whole genome shotgun sequence (162965 bp)
Overview 1 RT 1: 29074-35105 bp Neighborhood of RT #1 [29074, 35242] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 29074-29214 bp Ori: OXK59906.1 Feature: domain Description: SfsB Location: 29083-29155 bp Feature: domain Description: SfsB Location: 29083 -29155 bp Feature: gene Location: 29211-29681 bp Feature: gene Location: 30028-33237 bp Ori: OXK59908.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30556-31045 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 0556-3 1045 bp Feature: domain Description: nitrilase Location: 32551-33148 bp Feature: domain Description: nitrilase Location: 3 2551-3 3 148 bp Feature: gene Location: 33532-34335 bp Ori: OXK59909.1 Feature: domain Description: AbiEi_3_N Location: 33565-33826 bp Feature: domain Description: AbiEi_3 _N Location: 3 3 565-3 3 826 bp Feature: domain Description: AbiEi_3 Location: 33838-34294 bp Feature: domain Description: AbiEi_3 Location: 3 3 83 8-3 4294 bp Feature: gene Location: 34322-35242 bp Ori: OXK59910.1 Feature: domain Description: AbiEii Location: 34364-35105 bp Feature: domain Description: AbiEii Location: 3 43 64-3 5105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)