myRT

myRT report for GCA_002223555.1_ASM222355v1

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Seq: NIIL01000080.1 Escherichia coli strain FC10254 Scaffold81, whole genome shotgun sequence (2430 bp)
Overview 1 RT 1: 93-1725 bp Neighborhood of RT #1 [93, 1760] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 93-1760 bp Ori: OXK11607.1 Gene: ltrA Feature: domain Description: RVT_N Location: 141-378 bp Feature: domain Description: RVT_N Location: 1 41 -378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1 071 bp Feature: domain Description: GIIM Note: maturase Location: 1122-1356 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 22-1 356 bp Feature: domain Description: HNHc Note: nucleases Location: 1566-1725 bp Feature: domain Description: HNHc Note: nucleases Location: 1 566-1 725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NIIL01000056.1 Escherichia coli strain FC10254 Scaffold6, whole genome shotgun sequence (162965 bp)
Overview 1 RT 1: 127724-133833 bp Neighborhood of RT #1 [127724, 133892] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase SfsB Feature: gene Location: 127724-128644 bp Ori: OXK13664.1 Feature: domain Description: AbiEii Location: 127766-128507 bp Feature: domain Description: AbiEii Location: 12 7766-12 8507 bp Feature: gene Location: 128631-129434 bp Ori: OXK13665.1 Feature: domain Description: AbiEi_3_N Location: 128664-128925 bp Feature: domain Description: AbiEi_3_N Location: 12 8664-12 892 5 bp Feature: domain Description: AbiEi_3 Location: 128937-129393 bp Feature: domain Description: AbiEi_3 Location: 12 8937-12 9393 bp Feature: gene Location: 129729-132938 bp Ori: OXK13666.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 130257-130746 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1302 57-130746 bp Feature: domain Description: nitrilase Location: 132252-132849 bp Feature: domain Description: nitrilase Location: 132 2 52 -132 849 bp Feature: gene Location: 133285-133755 bp Feature: gene Location: 133752-133892 bp Ori: OXK13668.1 Feature: domain Description: SfsB Location: 133761-133833 bp Feature: domain Description: SfsB Location: 133761-133833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), SfsB (COG3423)

Seq: NIIL01000005.1 Escherichia coli strain FC10254 Scaffold13, whole genome shotgun sequence (126888 bp)
Overview 1 RT 1: 104176-108467 bp Neighborhood of RT #1 [104176, 108467] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 104176-105405 bp Ori: OXK19501.1 Feature: domain Description: YesM Location: 104656-105397 bp Feature: domain Description: YesM Location: 104656-1053 97 bp Feature: gene Location: 105478-105666 bp Feature: gene Location: 105988-106509 bp Ori: OXK19476.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105994-106276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105994-106276 bp Feature: domain Description: GIIM Note: maturase Location: 106324-106504 bp Feature: domain Description: GIIM Note: maturase Location: 1063 24-106504 bp Feature: gene Location: 106537-107076 bp Ori: OXK19477.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106867-106945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106867-106945 bp Feature: gene Location: 107301-107588 bp Feature: gene Location: 107562-108467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: NIIL01000081.1 Escherichia coli strain FC10254 Scaffold82, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 278-586 bp Feature: gene Location: 657-2180 bp Ori: OXK11605.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)