myRT

myRT report for GCA_002223575.1_ASM222357v1

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Seq: NIIG01000045.1 Escherichia coli strain FC10269 Scaffold42_1, whole genome shotgun sequence (20123 bp)
Overview 1 RT 1: 1-4061 bp Neighborhood of RT #1 [1, 4066] RVT-UG17 SLATT_5 PRK10597 Feature: gene Location: 1-1258 bp Feature: gene Location: 1381-1596 bp Feature: gene Location: 1696-3066 bp Ori: OXJ87354.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1924-2530 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 924-2530 bp Feature: gene Location: 3044-3595 bp Ori: OXJ87355.1 Feature: domain Description: SLATT_5 Location: 3050-3566 bp Feature: domain Description: SLATT_5 Location: 3050-3566 bp Feature: gene Location: 3818-4066 bp Ori: OXJ87356.1 Feature: domain Description: PRK10597 Location: 3821-4061 bp Feature: domain Description: PRK1 0597 Location: 3821 -4061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160), PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: NIIG01000028.1 Escherichia coli strain FC10269 Scaffold25_1, whole genome shotgun sequence (75318 bp)
Overview 1 RT 1: 49487-53367 bp Neighborhood of RT #1 [49487, 53372] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49487-49942 bp Ori: OXJ88679.1 Feature: domain Description: dut Location: 49490-49937 bp Feature: domain Description: dut Location: 49490-49937 bp Feature: gene Location: 50049-50645 bp Ori: OXJ88655.1 Feature: domain Description: slmA Location: 50055-50631 bp Feature: domain Description: slmA Location: 50055-50631 bp Feature: gene Location: 50691-51650 bp Ori: OXJ88656.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50826-51375 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5082 6-51375 bp Feature: gene Location: 51948-52589 bp Ori: OXJ88657.1 Feature: domain Description: pyrE Location: 51951-52584 bp Feature: domain Description: pyrE Location: 51951-52 584 bp Feature: gene Location: 52656-53372 bp Ori: OXJ88658.1 Feature: domain Description: rph Location: 52659-53367 bp Feature: domain Description: rph Location: 52 659-53367 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NIIG01000061.1 Escherichia coli strain FC10269 Scaffold58_1, whole genome shotgun sequence (3727 bp)
Overview 1 RT 1: 10-2719 bp Neighborhood of RT #1 [10, 2719] RVT-Retrons CspC Feature: gene Location: 10-102 bp Feature: gene Location: 90-272 bp Feature: gene Location: 846-1985 bp Ori: OXJ86672.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 990-1545 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 990-1545 bp Feature: gene Location: 1990-2193 bp Ori: OXJ86673.1 Feature: domain Description: CspC Location: 1993-2188 bp Feature: domain Description: CspC Location: 1993 -2188 bp Feature: gene Location: 2452-2719 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, CspC (COG1278)