myRT

myRT report for GCA_002223625.1_ASM222362v1

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Seq: NIIO01000030.1 Escherichia coli strain FC10247 Scaffold30_1, whole genome shotgun sequence (38551 bp)
Overview 1 RT 1: 14700-18824 bp Neighborhood of RT #1 [14700, 19097] GDP_FS_SDR_e PRK15434 RVT-GII IS285 YhhI YhhI Feature: gene Location: 14700-15665 bp Feature: domain Description: GDP_FS_SDR_e Location: 14715-15639 bp Feature: domain Description: GDP_FS_SDR_e Location: 1 471 5-1 5639 bp Feature: gene Location: 15668-16141 bp Feature: domain Description: PRK15434 Location: 15671-16121 bp Feature: domain Description: PRK1 5434 Location: 1 5671 -1 61 21 bp Feature: gene Location: 16849-17136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17014-17122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 701 4-1 71 22 bp Feature: gene Location: 17185-17904 bp Feature: domain Description: IS285 Location: 17215-17905 bp Feature: domain Description: IS285 Location: 1 721 5-1 7905 bp Feature: gene Location: 18047-19097 bp Feature: domain Description: YhhI Location: 18050-18410 bp Feature: domain Description: YhhI Location: 1 8050-1 841 0 bp Feature: domain Description: YhhI Location: 18470-18824 bp Feature: domain Description: YhhI Location: 1 8470-1 8824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), PRK15434 (GDP-mannose mannosyl hydrolase), RVT-GII, IS285 (COG3328), YhhI (COG5433)

Seq: NIIO01000058.1 Escherichia coli strain FC10247 Scaffold58_1, whole genome shotgun sequence (7313 bp)
Overview 1 RT 1: 1-3844 bp Neighborhood of RT #1 [1, 3849] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 1-208 bp Feature: gene Location: 121-327 bp Feature: gene Location: 1005-2906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1272-2103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 72 -2 103 bp Feature: domain Description: Intron_maturas2 Location: 2217-2475 bp Feature: domain Description: Intron_maturas2 Location: 2 2 17-2 475 bp Feature: domain Description: HNHc Note: nucleases Location: 2649-2811 bp Feature: domain Description: HNHc Note: nucleases Location: 2 649-2 811 bp Feature: gene Location: 3056-3553 bp Feature: domain Description: PRK13732 Location: 3059-3551 bp Feature: domain Description: PRK13732 Location: 3059-3551 bp Feature: gene Location: 3616-3849 bp Feature: domain Description: DUF905 Location: 3646-3844 bp Feature: domain Description: DUF905 Location: 3646-3844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF905 (pfam06006)

Seq: NIIO01000014.1 Escherichia coli strain FC10247 Scaffold14_1, whole genome shotgun sequence (140514 bp)
Overview 1 RT 1: 51673-55552 bp Neighborhood of RT #1 [51673, 55557] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 51673-52128 bp Feature: domain Description: dut Location: 51676-52123 bp Feature: domain Description: dut Location: 51676-52123 bp Feature: gene Location: 52235-52831 bp Feature: domain Description: slmA Location: 52241-52817 bp Feature: domain Description: slmA Location: 52241-52817 bp Feature: gene Location: 52877-53836 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53012-53561 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53 012-53 561 bp Feature: gene Location: 54134-54775 bp Feature: domain Description: pyrE Location: 54137-54770 bp Feature: domain Description: pyrE Location: 5413 7-54770 bp Feature: gene Location: 54841-55557 bp Feature: domain Description: rph Location: 54844-55552 bp Feature: domain Description: rph Location: 54844-55552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)