myRT

myRT report for GCA_002223635.1_ASM222363v1

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Seq: NIIT01000125.1 Escherichia coli strain FC10223 Scaffold124_1, whole genome shotgun sequence (1186 bp)
Overview 1 RT 1: 5-1073 bp Neighborhood of RT #1 [5, 1186] RVT-GII GIIM Feature: gene Location: 5-1186 bp Ori: OXK52664.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68-800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68-800 bp Feature: domain Description: GIIM Note: maturase Location: 875-1073 bp Feature: domain Description: GIIM Note: maturase Location: 875-1 073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NIIT01000138.1 Escherichia coli strain FC10223 Scaffold137_1, whole genome shotgun sequence (874 bp)
Overview 1 RT 1: 1-874 bp Neighborhood of RT #1 [1, 874] RVT-GII Feature: gene Location: 1-329 bp Ori: OXK51849.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274-328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 74-32 8 bp Feature: gene Location: 400-708 bp Feature: gene Location: 623-874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NIIT01000027.1 Escherichia coli strain FC10223 Scaffold27_1, whole genome shotgun sequence (56686 bp)
Overview 1 RT 1: 29074-35105 bp Neighborhood of RT #1 [29074, 35242] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 29074-29214 bp Ori: OXK56508.1 Feature: domain Description: SfsB Location: 29083-29155 bp Feature: domain Description: SfsB Location: 29083 -29155 bp Feature: gene Location: 29211-29681 bp Feature: gene Location: 30028-33237 bp Ori: OXK56510.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30556-31045 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 0556-3 1045 bp Feature: domain Description: nitrilase Location: 32551-33148 bp Feature: domain Description: nitrilase Location: 3 2551-3 3 148 bp Feature: gene Location: 33532-34335 bp Ori: OXK56511.1 Feature: domain Description: AbiEi_3_N Location: 33565-33826 bp Feature: domain Description: AbiEi_3 _N Location: 3 3 565-3 3 826 bp Feature: domain Description: AbiEi_3 Location: 33838-34294 bp Feature: domain Description: AbiEi_3 Location: 3 3 83 8-3 4294 bp Feature: gene Location: 34322-35242 bp Ori: OXK56512.1 Feature: domain Description: AbiEii Location: 34364-35105 bp Feature: domain Description: AbiEii Location: 3 43 64-3 5105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: NIIT01000022.1 Escherichia coli strain FC10223 Scaffold22_1, whole genome shotgun sequence (76198 bp)
Overview 1 RT 1: 23920-28211 bp Neighborhood of RT #1 [23920, 28211] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 23920-25149 bp Ori: OXK56980.1 Feature: domain Description: YesM Location: 24400-25141 bp Feature: domain Description: YesM Location: 24 4 00-2514 1 bp Feature: gene Location: 25222-25410 bp Feature: gene Location: 25732-26253 bp Ori: OXK56982.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25738-26020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25738-26020 bp Feature: domain Description: GIIM Note: maturase Location: 26068-26248 bp Feature: domain Description: GIIM Note: maturase Location: 26068-2624 8 bp Feature: gene Location: 26281-26820 bp Ori: OXK56983.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26611-26689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26611-26689 bp Feature: gene Location: 27045-27332 bp Feature: gene Location: 27306-28211 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: NIIT01000069.1 Escherichia coli strain FC10223 Scaffold68_1, whole genome shotgun sequence (12595 bp)
Overview 1 RT 1: 422-4623 bp Neighborhood of RT #1 [422, 4623] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 422-682 bp Ori: OXK53800.1 Feature: domain Description: DUF905 Location: 479-677 bp Feature: domain Description: DUF905 Location: 479-677 bp Feature: gene Location: 713-1198 bp Ori: OXK53801.1 Feature: domain Description: PRK13732 Location: 716-1196 bp Feature: domain Description: PRK13732 Location: 716-1196 bp Feature: gene Location: 1348-3249 bp Ori: OXK53802.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1615-2446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1615 -2446 bp Feature: domain Description: Intron_maturas2 Location: 2560-2818 bp Feature: domain Description: Intron_maturas2 Location: 25 60-2818 bp Feature: domain Description: HNHc Note: nucleases Location: 2992-3154 bp Feature: domain Description: HNHc Note: nucleases Location: 2992-315 4 bp Feature: gene Location: 3898-4104 bp Feature: gene Location: 4263-4623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)