myRT

myRT report for GCA_002223705.1_ASM222370v1

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Seq: NIIK01000123.1 Escherichia coli strain FC10255 Scaffold119_1, whole genome shotgun sequence (1572 bp)
Overview 1 RT 1: 20-1235 bp Neighborhood of RT #1 [20, 1480] RVT-GII GIIM Feature: gene Location: 20-1480 bp Ori: OXK03210.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 230-962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 230-962 bp Feature: domain Description: GIIM Note: maturase Location: 1037-1235 bp Feature: domain Description: GIIM Note: maturase Location: 1 037-1 235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NIIK01000065.1 Escherichia coli strain FC10255 Scaffold63_1, whole genome shotgun sequence (16481 bp)
Overview 1 RT 1: 10122-14104 bp Neighborhood of RT #1 [10122, 14130] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 10122-11126 bp Ori: OXK05086.1 Feature: domain Description: Asparaginase_2 Location: 10185-11118 bp Feature: domain Description: Asparaginase_2 Location: 10185-11118 bp Feature: gene Location: 11311-11513 bp Feature: gene Location: 11561-12123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11867-11969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11867-11969 bp Feature: gene Location: 12348-12554 bp Feature: gene Location: 12769-14130 bp Ori: OXK05083.1 Feature: domain Description: DcuC Location: 12772-14104 bp Feature: domain Description: DcuC Location: 12 772 -14104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)

Seq: NIIK01000081.1 Escherichia coli strain FC10255 Scaffold79_1, whole genome shotgun sequence (8932 bp)
Overview 1 RT 1: 4910-8395 bp Neighborhood of RT #1 [4910, 8395] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 4910-5332 bp Ori: OXK04284.1 Feature: domain Description: DUF1380 Location: 4913-5210 bp Feature: domain Description: DUF13 80 Location: 4913 -5210 bp Feature: gene Location: 5329-5520 bp Feature: gene Location: 5834-7501 bp Ori: OXK04286.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5882-6119 bp Feature: domain Description: RVT_N Location: 5882-6119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6170-6812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6170-6812 bp Feature: domain Description: GIIM Note: maturase Location: 6863-7097 bp Feature: domain Description: GIIM Note: maturase Location: 6863 -7097 bp Feature: domain Description: HNHc Note: nucleases Location: 7307-7466 bp Feature: domain Description: HNHc Note: nucleases Location: 73 07-7466 bp Feature: gene Location: 8044-8232 bp Feature: gene Location: 8238-8395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NIIK01000054.1 Escherichia coli strain FC10255 Scaffold52_1, whole genome shotgun sequence (21980 bp)
Overview 1 RT 1: 18330-21980 bp Neighborhood of RT #1 [18330, 21980] MobC RVT-GII GIIM IMP_DIM-like_MBL-B1 PRK15417 Feature: gene Location: 18330-18485 bp Feature: gene Location: 18444-18710 bp Ori: OXK05892.1 Feature: domain Description: MobC Location: 18495-18615 bp Feature: domain Description: MobC Location: 184 95-18615 bp Feature: gene Location: 19447-20796 bp Ori: OXK05893.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19729-20347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19729-2034 7 bp Feature: domain Description: GIIM Note: maturase Location: 20395-20599 bp Feature: domain Description: GIIM Note: maturase Location: 20395-20599 bp Feature: gene Location: 20886-21626 bp Ori: OXK05894.1 Feature: domain Description: IMP_DIM-like_MBL-B1 Location: 20958-21579 bp Feature: domain Description: IMP_DIM-like_MBL-B1 Location: 20958-21579 bp Feature: gene Location: 21779-21980 bp Ori: OXK05895.1 Feature: domain Description: PRK15417 Location: 21782-21980 bp Feature: domain Description: PRK154 17 Location: 21782-21980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MobC (pfam05713), RVT-GII, GIIM (pfam08388), IMP_DIM-like_MBL-B1 (cd16301), PRK15417 (integron integrase)

Seq: NIIK01000014.1 Escherichia coli strain FC10255 Scaffold13_1, whole genome shotgun sequence (137896 bp)
Overview 1 RT 1: 99533-103816 bp Neighborhood of RT #1 [99533, 103824] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 99533-100438 bp Feature: gene Location: 100412-100699 bp Feature: gene Location: 100924-101463 bp Ori: OXK11278.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101254-101332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10125 4-101332 bp Feature: gene Location: 101491-102012 bp Ori: OXK11279.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101497-101779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101497-101779 bp Feature: domain Description: GIIM Note: maturase Location: 101827-102007 bp Feature: domain Description: GIIM Note: maturase Location: 101827-102007 bp Feature: gene Location: 102334-102522 bp Feature: gene Location: 102595-103824 bp Ori: OXK11323.1 Feature: domain Description: YesM Location: 103075-103816 bp Feature: domain Description: YesM Location: 103075 -103816 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: NIIK01000010.1 Escherichia coli strain FC10255 Scaffold9_1, whole genome shotgun sequence (166223 bp)
Overview 1 RT 1: 137481-143590 bp Neighborhood of RT #1 [137481, 143649] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase SfsB Feature: gene Location: 137481-138401 bp Ori: OXK12025.1 Feature: domain Description: AbiEii Location: 137523-138264 bp Feature: domain Description: AbiEii Location: 137523-13826 4 bp Feature: gene Location: 138388-139191 bp Ori: OXK12026.1 Feature: domain Description: AbiEi_3_N Location: 138421-138682 bp Feature: domain Description: AbiEi_3_N Location: 138421-1386 82 bp Feature: domain Description: AbiEi_3 Location: 138694-139150 bp Feature: domain Description: AbiEi_3 Location: 1386 94-139150 bp Feature: gene Location: 139486-142695 bp Ori: OXK12027.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 140014-140503 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 140014-140503 bp Feature: domain Description: nitrilase Location: 142009-142606 bp Feature: domain Description: nitrilase Location: 142009-1426 06 bp Feature: gene Location: 143042-143512 bp Feature: gene Location: 143509-143649 bp Ori: OXK12029.1 Feature: domain Description: SfsB Location: 143518-143590 bp Feature: domain Description: SfsB Location: 143518-143590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), SfsB (COG3423)