myRT

myRT report for GCA_002223735.1_ASM222373v1

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Seq: NIIN01000002.1 Escherichia coli strain FC10248 Scaffold10, whole genome shotgun sequence (154769 bp)
Overview 1 RT 1: 50013-53893 bp Neighborhood of RT #1 [50013, 53898] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 50013-50468 bp Ori: OXK30373.1 Feature: domain Description: dut Location: 50016-50463 bp Feature: domain Description: dut Location: 5001 6-50463 bp Feature: gene Location: 50575-51171 bp Ori: OXK30275.1 Feature: domain Description: slmA Location: 50581-51157 bp Feature: domain Description: slmA Location: 50581 -51 1 57 bp Feature: gene Location: 51217-52176 bp Ori: OXK30276.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51352-51901 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51 352-51 901 bp Feature: gene Location: 52474-53115 bp Ori: OXK30277.1 Feature: domain Description: pyrE Location: 52477-53110 bp Feature: domain Description: pyrE Location: 52477-531 1 0 bp Feature: gene Location: 53182-53898 bp Ori: OXK30278.1 Feature: domain Description: rph Location: 53185-53893 bp Feature: domain Description: rph Location: 531 85-53893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NIIN01000096.1 Escherichia coli strain FC10248 Scaffold8, whole genome shotgun sequence (184914 bp)
Overview 1 RT 1: 1-3451 bp Neighborhood of RT #1 [1, 3456] Peptidase_S74 RVT-UG17 SLATT_5 PRK10597 Feature: gene Location: 1-648 bp Ori: OXK22204.1 Feature: domain Description: Peptidase_S74 Location: 274-421 bp Feature: domain Description: Peptidase_S74 Location: 2 74-42 1 bp Feature: gene Location: 771-986 bp Feature: gene Location: 1086-2456 bp Ori: OXK22205.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1314-1920 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1314-192 0 bp Feature: gene Location: 2434-2985 bp Ori: OXK22206.1 Feature: domain Description: SLATT_5 Location: 2440-2956 bp Feature: domain Description: SLATT_5 Location: 2 440-2 956 bp Feature: gene Location: 3208-3456 bp Ori: OXK22207.1 Feature: domain Description: PRK10597 Location: 3211-3451 bp Feature: domain Description: PRK10597 Location: 32 11-3451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_S74 (pfam13884), RVT-UG17, SLATT_5 (pfam18160), PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: NIIN01000051.1 Escherichia coli strain FC10248 Scaffold39, whole genome shotgun sequence (32747 bp)
Overview 1 RT 1: 8926-14892 bp Neighborhood of RT #1 [8926, 14892] umuC PRK10276 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 8926-10197 bp Ori: OXK25320.1 Feature: domain Description: umuC Location: 8929-10189 bp Feature: domain Description: umuC Location: 8929-10189 bp Feature: gene Location: 10197-10616 bp Ori: OXK25321.1 Feature: domain Description: PRK10276 Location: 10236-10602 bp Feature: domain Description: PRK10276 Location: 1023 6-10602 bp Feature: gene Location: 10974-12875 bp Ori: OXK25322.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11241-12072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11241-12072 bp Feature: domain Description: Intron_maturas2 Location: 12186-12444 bp Feature: domain Description: Intron_maturas2 Location: 12186-12444 bp Feature: domain Description: HNHc Note: nucleases Location: 12618-12780 bp Feature: domain Description: HNHc Note: nucleases Location: 12618-12780 bp Feature: gene Location: 13058-13411 bp Feature: gene Location: 14296-14892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)