myRT

myRT report for GCA_002223935.1_ASM222393v1

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Seq: NIRX01000038.1 Escherichia coli strain CoR-19 Scaffold38, whole genome shotgun sequence (16457 bp)
Overview 1 RT 1: 10215-14197 bp Neighborhood of RT #1 [10215, 14223] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 10215-11246 bp Ori: OXK80253.1 Feature: domain Description: Asparaginase_2 Location: 10305-11238 bp Feature: domain Description: Asparaginase_2 Location: 1 0305-1 1 238 bp Feature: gene Location: 11404-11606 bp Feature: gene Location: 11654-12216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11960-12062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 960-1 2062 bp Feature: gene Location: 12582-12809 bp Feature: gene Location: 12862-14223 bp Ori: OXK80254.1 Feature: domain Description: DcuC Location: 12865-14197 bp Feature: domain Description: DcuC Location: 1 2865-1 41 97 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)

Seq: NIRX01000001.1 Escherichia coli strain CoR-19 Scaffold1, whole genome shotgun sequence (865470 bp)
Overview 1 RT 1: 668538-673436 bp Neighborhood of RT #1 [668538, 673436] RVT-Retrons Feature: gene Location: 668538-668768 bp Feature: gene Location: 668983-669222 bp Feature: gene Location: 669793-671550 bp Ori: OXK86483.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 669937-670555 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 669937-670555 bp Feature: gene Location: 671797-672924 bp Feature: gene Location: 672921-673436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: NIRX01000052.1 Escherichia coli strain CoR-19 Scaffold52, whole genome shotgun sequence (7618 bp)
Overview 1 RT 1: 56-7206 bp Neighborhood of RT #1 [56, 7448] AidA YeeP RVT-UG1 GerD Feature: gene Location: 56-1468 bp Feature: domain Description: AidA Location: 95-1463 bp Feature: domain Description: AidA Location: 95-1463 bp Feature: gene Location: 1841-2752 bp Ori: OXK78949.1 Feature: domain Description: YeeP Location: 1883-2750 bp Feature: domain Description: YeeP Location: 1883 -2750 bp Feature: gene Location: 3317-7005 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 3929-4439 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 3 929-443 9 bp Feature: gene Location: 7014-7448 bp Ori: OXK78950.1 Feature: domain Description: GerD Location: 7092-7206 bp Feature: domain Description: GerD Location: 7092-7206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AidA (COG3468), YeeP (COG3596), RVT-UG1, GerD (pfam17898)

Seq: NIRX01000080.1 Escherichia coli strain CoR-19 Scaffold80, whole genome shotgun sequence (1197 bp)
Overview 1 RT 1: 10-1084 bp Neighborhood of RT #1 [10, 1197] RVT-GII GIIM Feature: gene Location: 10-1197 bp Ori: OXK77395.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79-811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79-811 bp Feature: domain Description: GIIM Note: maturase Location: 886-1084 bp Feature: domain Description: GIIM Note: maturase Location: 886-1084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NIRX01000050.1 Escherichia coli strain CoR-19 Scaffold50, whole genome shotgun sequence (8155 bp)
Overview 1 RT 1: 6444-8020 bp Neighborhood of RT #1 [6444, 8020] RAYT IS285 RVT-GII RVT-GII Feature: gene Location: 6444-6566 bp Feature: domain Description: RAYT Location: 6447-6567 bp Feature: domain Description: RAYT Location: 6447-65 67 bp Feature: gene Location: 6574-7241 bp Feature: domain Description: IS285 Location: 6604-6982 bp Feature: domain Description: IS285 Location: 6604-6982 bp Feature: gene Location: 7396-7771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7399-7525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7399-75 25 bp Feature: gene Location: 7771-8020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7774-8020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7774-8020 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAYT (COG1943), IS285 (COG3328), RVT-GII