myRT

myRT report for GCA_002224715.1_ASM222471v1

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Seq: JSXM01000146.1 Escherichia coli strain NA081 contig0146, whole genome shotgun sequence (4848 bp)
Overview 1 RT 1: 1-4848 bp Neighborhood of RT #1 [1, 4848] RVT-Retrons FRG Feature: gene Location: 1-366 bp Feature: gene Location: 645-938 bp Feature: gene Location: 1261-2211 bp Ori: OXL71673.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1441-1984 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 441 -1 984 bp Feature: gene Location: 2320-3684 bp Ori: OXL71671.1 Feature: domain Description: FRG Location: 2887-3172 bp Feature: domain Description: FRG Location: 2887-31 72 bp Feature: gene Location: 4197-4848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, FRG (smart00901)

Seq: JSXM01000046.1 Escherichia coli strain NA081 contig0046, whole genome shotgun sequence (75844 bp)
Overview 1 RT 1: 23628-28947 bp Neighborhood of RT #1 [23628, 28973] YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 23628-24857 bp Ori: OXL79599.1 Feature: domain Description: YesM Location: 24108-24849 bp Feature: domain Description: YesM Location: 2 4108-2 4849 bp Feature: gene Location: 24925-25236 bp Feature: gene Location: 25440-25922 bp Ori: OXL79647.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25449-25689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5449-2 5689 bp Feature: domain Description: GIIM Note: maturase Location: 25737-25917 bp Feature: domain Description: GIIM Note: maturase Location: 2 5737-2 5917 bp Feature: gene Location: 25989-26528 bp Ori: OXL79601.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26319-26397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6319-2 6397 bp Feature: gene Location: 27014-27919 bp Feature: gene Location: 28056-28973 bp Ori: OXL79603.1 Feature: domain Description: PFLE_PFLC Location: 28092-28947 bp Feature: domain Description: PFLE_PFLC Location: 2 8092 -2 8947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)

Seq: JSXM01000084.1 Escherichia coli strain NA081 contig0084, whole genome shotgun sequence (1445 bp)
Overview 1 RT 1: 1-1444 bp Neighborhood of RT #1 [1, 1445] RVT_N RVT-GII Feature: gene Location: 1-219 bp Feature: gene Location: 805-1445 bp Ori: OXL77081.1 Feature: domain Description: RVT_N Location: 853-1090 bp Feature: domain Description: RVT_N Location: 853 -1090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1141-1444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1141-1444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JSXM01000041.1 Escherichia coli strain NA081 contig0041, whole genome shotgun sequence (162862 bp)
Overview 1 RT 1: 29013-35044 bp Neighborhood of RT #1 [29013, 35181] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 29013-29153 bp Ori: OXL79690.1 Feature: domain Description: SfsB Location: 29022-29094 bp Feature: domain Description: SfsB Location: 29022-29094 bp Feature: gene Location: 29150-29620 bp Feature: gene Location: 29967-33176 bp Ori: OXL79692.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30495-30984 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 304 95-30984 bp Feature: domain Description: nitrilase Location: 32490-33087 bp Feature: domain Description: nitrilase Location: 324 90-33087 bp Feature: gene Location: 33492-34274 bp Ori: OXL79693.1 Feature: domain Description: AbiEi_3_N Location: 33504-33765 bp Feature: domain Description: AbiEi_3_N Location: 33504 -33765 bp Feature: domain Description: AbiEi_3 Location: 33777-34233 bp Feature: domain Description: AbiEi_3 Location: 33777-34 233 bp Feature: gene Location: 34261-35181 bp Ori: OXL79694.1 Feature: domain Description: AbiEii Location: 34303-35044 bp Feature: domain Description: AbiEii Location: 34 303-3504 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)