myRT

myRT report for GCA_002224755.1_ASM222475v1

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Seq: JSXK01000094.1 Escherichia coli strain NA023 contig0094, whole genome shotgun sequence (18924 bp)
Overview 1 RT 1: 16529-18851 bp Neighborhood of RT #1 [16529, 18856] YesM RVT-GII GIIM Feature: gene Location: 16529-17758 bp Ori: OXL69883.1 Feature: domain Description: YesM Location: 17009-17750 bp Feature: domain Description: YesM Location: 1 7009-1 7750 bp Feature: gene Location: 17826-18137 bp Feature: gene Location: 18374-18856 bp Ori: OXL69886.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18383-18623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8383-1 8623 bp Feature: domain Description: GIIM Note: maturase Location: 18671-18851 bp Feature: domain Description: GIIM Note: maturase Location: 1 8671 -1 8851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JSXK01000103.1 Escherichia coli strain NA023 contig0103, whole genome shotgun sequence (19210 bp)
Overview 1 RT 1: 39-2997 bp Neighborhood of RT #1 [39, 3023] RVT-GII PFLE_PFLC Feature: gene Location: 39-578 bp Ori: OXL69091.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369-447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369-447 bp Feature: gene Location: 1064-1969 bp Feature: gene Location: 2106-3023 bp Ori: OXL69093.1 Feature: domain Description: PFLE_PFLC Location: 2142-2997 bp Feature: domain Description: PFLE_PFLC Location: 2 142 -2 997 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PFLE_PFLC (TIGR02494)

Seq: JSXK01000106.1 Escherichia coli strain NA023 contig0106, whole genome shotgun sequence (47920 bp)
Overview 1 RT 1: 646-4528 bp Neighborhood of RT #1 [646, 4533] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 646-1104 bp Ori: OXL69047.1 Feature: domain Description: dut Location: 652-1099 bp Feature: domain Description: dut Location: 652-1099 bp Feature: gene Location: 1211-1807 bp Ori: OXL69048.1 Gene: slmA Feature: domain Description: slmA Location: 1217-1793 bp Feature: domain Description: slmA Location: 1217-1793 bp Feature: gene Location: 1853-2812 bp Ori: OXL69049.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1988-2537 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1988-253 7 bp Feature: gene Location: 3110-3751 bp Ori: OXL69050.1 Gene: pyrE Feature: domain Description: pyrE Location: 3113-3746 bp Feature: domain Description: pyrE Location: 3 113 -3 746 bp Feature: gene Location: 3817-4533 bp Ori: OXL69051.1 Gene: rph Feature: domain Description: rph Location: 3820-4528 bp Feature: domain Description: rph Location: 3 820-4528 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)