myRT

myRT report for GCA_002224785.1_ASM222478v1

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Seq: JWHS01000255.1 Escherichia coli strain NA447 contig0255, whole genome shotgun sequence (5885 bp)
Overview 1 RT 1: 645-5289 bp Neighborhood of RT #1 [645, 5289] RVT-UG1 GerD Feature: gene Location: 645-4334 bp Ori: OXL51677.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1257-1767 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1 257-1 767 bp Feature: gene Location: 4343-4777 bp Ori: OXL51678.1 Feature: domain Description: GerD Location: 4421-4535 bp Feature: domain Description: GerD Location: 4421 -4535 bp Feature: gene Location: 5062-5289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1, GerD (pfam17898)

Seq: JWHS01000062.1 Escherichia coli strain NA447 contig0062, whole genome shotgun sequence (2344 bp)
Overview 1 RT 1: 83-1715 bp Neighborhood of RT #1 [83, 1750] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 83-1750 bp Ori: OXL61996.1 Feature: domain Description: RVT_N Location: 131-368 bp Feature: domain Description: RVT_N Location: 131-368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419-1061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419-1061 bp Feature: domain Description: GIIM Note: maturase Location: 1112-1346 bp Feature: domain Description: GIIM Note: maturase Location: 1112 -1346 bp Feature: domain Description: HNHc Note: nucleases Location: 1556-1715 bp Feature: domain Description: HNHc Note: nucleases Location: 1556-1715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JWHS01000155.1 Escherichia coli strain NA447 contig0155, whole genome shotgun sequence (16359 bp)
Overview 1 RT 1: 9550-15392 bp Neighborhood of RT #1 [9550, 15427] DUF5339 Asparaginase_2 RVT-GII DcuC PRK13381 Feature: gene Location: 9550-9828 bp Ori: OXL54533.1 Feature: domain Description: DUF5339 Location: 9613-9814 bp Feature: domain Description: DUF53 3 9 Location: 9613 -9814 bp Feature: gene Location: 10166-11188 bp Ori: OXL54540.1 Feature: domain Description: Asparaginase_2 Location: 10247-11180 bp Feature: domain Description: Asparaginase_2 Location: 10247-11180 bp Feature: gene Location: 11721-12167 bp Ori: OXL54534.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12027-12129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12027-12129 bp Feature: gene Location: 12813-14174 bp Ori: OXL54535.1 Feature: domain Description: DcuC Location: 12816-14148 bp Feature: domain Description: DcuC Location: 12816-14148 bp Feature: gene Location: 14171-15427 bp Ori: OXL54536.1 Feature: domain Description: PRK13381 Location: 14177-15392 bp Feature: domain Description: PRK13 3 81 Location: 14177-153 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5339 (pfam17274), Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771), PRK13381 (peptidase T; Provisional)

Seq: JWHS01000248.1 Escherichia coli strain NA447 contig0248, whole genome shotgun sequence (1912 bp)
Overview 1 RT 1: 77-1883 bp Neighborhood of RT #1 [77, 1912] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 77-1912 bp Ori: OXL51890.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344-1175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 4 -1175 bp Feature: domain Description: Intron_maturas2 Location: 1289-1547 bp Feature: domain Description: Intron_maturas2 Location: 1289-154 7 bp Feature: domain Description: HNHc Note: nucleases Location: 1721-1883 bp Feature: domain Description: HNHc Note: nucleases Location: 1721-1883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JWHS01000151.1 Escherichia coli strain NA447 contig0151, whole genome shotgun sequence (7166 bp)
Overview 1 RT 1: 1625-4338 bp Neighborhood of RT #1 [1625, 4445] RVT-Retrons PRK09678 Feature: gene Location: 1625-2557 bp Ori: OXL54955.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1727-2321 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1727-2321 bp Feature: gene Location: 2559-3527 bp Feature: gene Location: 4173-4445 bp Ori: OXL54957.1 Feature: domain Description: PRK09678 Location: 4182-4338 bp Feature: domain Description: PRK09678 Location: 4182-4338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)