myRT

myRT report for GCA_002225465.1_ASM222546v1

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Seq: NLFQ01000101.1 Escherichia coli strain MOD1-EC5752 MOD1-EC5752_101_length_2276_cov_435.295, whole genome shotgun sequence (2276 bp)
Overview 1 RT 1: 93-2275 bp Neighborhood of RT #1 [93, 2275] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1 098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 73-1 371 bp Feature: gene Location: 1910-2275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NLFQ01000011.1 Escherichia coli strain MOD1-EC5752 MOD1-EC5752_11_length_107607_cov_89.7417, whole genome shotgun sequence (107607 bp)
Overview 1 RT 1: 98354-103618 bp Neighborhood of RT #1 [98354, 103821] prfC PRK10597 RVT-Retrons TIR_2 Methyltransf_12 Feature: gene Location: 98354-99940 bp Feature: domain Description: prfC Location: 98372-99938 bp Feature: domain Description: prfC Location: 98372 -99938 bp Feature: gene Location: 100160-100420 bp Feature: domain Description: PRK10597 Location: 100163-100403 bp Feature: domain Description: PRK10597 Location: 100163-100403 bp Feature: gene Location: 100778-102382 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 101069-101660 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 101069-101660 bp Feature: domain Description: TIR_2 Location: 101987-102320 bp Feature: domain Description: TIR_2 Location: 101987-102 32 0 bp Feature: gene Location: 102712-102885 bp Feature: gene Location: 103153-103821 bp Feature: domain Description: Methyltransf_12 Location: 103327-103618 bp Feature: domain Description: Methyltransf_12 Location: 10332 7-103618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Methyltransf_12 (pfam08242), prfC (TIGR00503)

Seq: NLFQ01000063.1 Escherichia coli strain MOD1-EC5752 MOD1-EC5752_63_length_16081_cov_260.82, whole genome shotgun sequence (16080 bp)
Overview 1 RT 1: 10819-14242 bp Neighborhood of RT #1 [10819, 14283] PapB DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 10819-11100 bp Feature: domain Description: PapB Location: 10822-11092 bp Feature: domain Description: PapB Location: 10822-11092 bp Feature: gene Location: 11545-11691 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 11557-11668 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 11557-11668 bp Feature: gene Location: 11807-13039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12008-12662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12008-12662 bp Feature: domain Description: GIIM Note: maturase Location: 12740-12962 bp Feature: domain Description: GIIM Note: maturase Location: 12740-12962 bp Feature: gene Location: 13132-13293 bp Feature: gene Location: 13501-14283 bp Feature: domain Description: DDE_Tnp_IS66 Location: 13507-14242 bp Feature: domain Description: DDE_Tnp_IS66 Location: 13 507-14242 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PapB (pfam03333), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: NLFQ01000065.1 Escherichia coli strain MOD1-EC5752 MOD1-EC5752_65_length_14817_cov_92.8953, whole genome shotgun sequence (14817 bp)
Overview 1 RT 1: 7736-11625 bp Neighborhood of RT #1 [7736, 11630] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 7736-8050 bp Feature: gene Location: 8448-8645 bp Feature: gene Location: 8814-9248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9006-9222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9006-9222 bp Feature: gene Location: 9221-9874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9224-9632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9224 -9632 bp Feature: domain Description: GIIM Note: maturase Location: 9680-9872 bp Feature: domain Description: GIIM Note: maturase Location: 9680-9872 bp Feature: gene Location: 10250-10468 bp Feature: gene Location: 10599-11630 bp Feature: domain Description: LacI Location: 10641-10776 bp Feature: domain Description: LacI Location: 1064 1-10776 bp Feature: domain Description: PBP1_GntR Location: 10815-11625 bp Feature: domain Description: PBP1_GntR Location: 10815-11625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)