myRT

myRT report for GCA_002225505.1_ASM222550v1

Download annotations/find similar RTs

Seq: NLFP01000020.1 Escherichia coli strain MOD1-EC5753 MOD1-EC5753_20_length_98895_cov_81.6469, whole genome shotgun sequence (98895 bp)
Overview 1 RT 1: 49457-53339 bp Neighborhood of RT #1 [49457, 53344] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49457-49915 bp Feature: domain Description: dut Location: 49463-49910 bp Feature: domain Description: dut Location: 49463-4991 0 bp Feature: gene Location: 50022-50618 bp Feature: domain Description: slmA Location: 50028-50604 bp Feature: domain Description: slmA Location: 50028-50604 bp Feature: gene Location: 50664-51623 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50799-51348 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50799-51 348 bp Feature: gene Location: 51921-52577 bp Feature: domain Description: pyrE Location: 51939-52572 bp Feature: domain Description: pyrE Location: 51 939-52572 bp Feature: gene Location: 52628-53344 bp Feature: domain Description: rph Location: 52631-53339 bp Feature: domain Description: rph Location: 52631 -53339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NLFP01000044.1 Escherichia coli strain MOD1-EC5753 MOD1-EC5753_44_length_33321_cov_72.1635, whole genome shotgun sequence (33321 bp)
Overview 1 RT 1: 23376-27119 bp Neighborhood of RT #1 [23376, 27130] SmpB RVT-UG11 PRK09678 D Feature: gene Location: 23376-23858 bp Feature: domain Description: SmpB Location: 23406-23853 bp Feature: domain Description: SmpB Location: 2 3406-2 3853 bp Feature: gene Location: 23992-24159 bp Feature: gene Location: 24544-25317 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 24679-25132 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 4679-2 5132 bp Feature: gene Location: 25721-25939 bp Feature: domain Description: PRK09678 Location: 25724-25922 bp Feature: domain Description: PRK09678 Location: 2 572 4-2 592 2 bp Feature: gene Location: 26030-27130 bp Feature: domain Description: D Location: 26036-27119 bp Feature: domain Description: D Location: 2 6036-2 7119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional), D (PHA02561)

Seq: NLFP01000049.1 Escherichia coli strain MOD1-EC5753 MOD1-EC5753_49_length_25928_cov_90.8825, whole genome shotgun sequence (25928 bp)
Overview 1 RT 1: 22164-25565 bp Neighborhood of RT #1 [22164, 25565] PRK13699 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 22164-22817 bp Feature: domain Description: PRK13699 Location: 22209-22815 bp Feature: domain Description: PRK13 699 Location: 22209-22815 bp Feature: gene Location: 22924-23124 bp Feature: gene Location: 23397-25097 bp Feature: domain Description: RVT_N Location: 23451-23694 bp Feature: domain Description: RVT_N Location: 23 451-23 694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23739-24375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 73 9-243 75 bp Feature: domain Description: GIIM Note: maturase Location: 24426-24660 bp Feature: domain Description: GIIM Note: maturase Location: 24426-24660 bp Feature: domain Description: HNHc Note: nucleases Location: 24891-25041 bp Feature: domain Description: HNHc Note: nucleases Location: 24891-25041 bp Feature: gene Location: 25222-25386 bp Feature: gene Location: 25413-25565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13699 (putative methylase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)