myRT

myRT report for GCA_002225535.1_ASM222553v1

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Seq: NLFR01000022.1 Escherichia coli strain MOD1-EC5750 MOD1-EC5750_22_length_72593_cov_120.4, whole genome shotgun sequence (72593 bp)
Overview 1 RT 1: 44982-48864 bp Neighborhood of RT #1 [44982, 48869] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 44982-45440 bp Feature: domain Description: dut Location: 44988-45435 bp Feature: domain Description: dut Location: 44988-45435 bp Feature: gene Location: 45547-46143 bp Feature: domain Description: slmA Location: 45553-46129 bp Feature: domain Description: slmA Location: 45553-461 29 bp Feature: gene Location: 46189-47148 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46324-46873 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46324-46873 bp Feature: gene Location: 47446-48102 bp Feature: domain Description: pyrE Location: 47464-48097 bp Feature: domain Description: pyrE Location: 47464-48097 bp Feature: gene Location: 48153-48869 bp Feature: domain Description: rph Location: 48156-48864 bp Feature: domain Description: rph Location: 481 56-48864 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NLFR01000064.1 Escherichia coli strain MOD1-EC5750 MOD1-EC5750_64_length_14858_cov_114.987, whole genome shotgun sequence (14858 bp)
Overview 1 RT 1: 7736-11625 bp Neighborhood of RT #1 [7736, 11630] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 7736-8050 bp Feature: gene Location: 8448-8645 bp Feature: gene Location: 8814-9248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9006-9222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9006-92 2 2 bp Feature: gene Location: 9221-9874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9224-9632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 2 4-9632 bp Feature: domain Description: GIIM Note: maturase Location: 9680-9872 bp Feature: domain Description: GIIM Note: maturase Location: 9680-9872 bp Feature: gene Location: 10250-10468 bp Feature: gene Location: 10599-11630 bp Feature: domain Description: LacI Location: 10641-10776 bp Feature: domain Description: LacI Location: 10641-10776 bp Feature: domain Description: PBP1_GntR Location: 10815-11625 bp Feature: domain Description: PBP1_GntR Location: 10815-1162 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)

Seq: NLFR01000078.1 Escherichia coli strain MOD1-EC5750 MOD1-EC5750_78_length_10016_cov_125.304, whole genome shotgun sequence (10016 bp)
Overview 1 RT 1: 143-4055 bp Neighborhood of RT #1 [143, 4055] RVT-GII GIIM PHA02517 Feature: gene Location: 143-532 bp Feature: gene Location: 1163-2686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1436-2168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143 6-2168 bp Feature: domain Description: GIIM Note: maturase Location: 2243-2441 bp Feature: domain Description: GIIM Note: maturase Location: 2243 -2441 bp Feature: gene Location: 2815-3255 bp Feature: domain Description: PHA02517 Location: 2818-3220 bp Feature: domain Description: PHA02517 Location: 2818-3 220 bp Feature: gene Location: 3432-4055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NLFR01000095.1 Escherichia coli strain MOD1-EC5750 MOD1-EC5750_95_length_3939_cov_69.4591, whole genome shotgun sequence (3939 bp)
Overview 1 RT 1: 176-3347 bp Neighborhood of RT #1 [176, 3349] PRK10276 RVT-GII InsA DDE_Tnp_IS1 Feature: gene Location: 176-859 bp Feature: domain Description: PRK10276 Location: 479-842 bp Feature: domain Description: PRK10276 Location: 4 79-84 2 bp Feature: gene Location: 1013-1378 bp Feature: gene Location: 1490-2500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1496-2108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 96-2108 bp Feature: gene Location: 2652-2927 bp Feature: domain Description: InsA Location: 2655-2919 bp Feature: domain Description: InsA Location: 2655-2919 bp Feature: gene Location: 2846-3349 bp Feature: domain Description: DDE_Tnp_IS1 Location: 2957-3347 bp Feature: domain Description: DDE_Tnp_IS1 Location: 2957-334 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), InsA (COG3677), DDE_Tnp_IS1 (pfam03400)