myRT

myRT report for GCA_002225595.1_ASM222559v1

Download annotations/find similar RTs

Seq: NLHR01000103.1 Escherichia coli strain MOD1-EC5694 MOD1-EC5694_105_length_30276_cov_72.2, whole genome shotgun sequence (30276 bp)
Overview 1 RT 1: 5783-9665 bp Neighborhood of RT #1 [5783, 9670] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 5783-6241 bp Feature: domain Description: dut Location: 5789-6236 bp Feature: domain Description: dut Location: 5789-6236 bp Feature: gene Location: 6348-6944 bp Feature: domain Description: slmA Location: 6354-6930 bp Feature: domain Description: slmA Location: 6354-6930 bp Feature: gene Location: 6990-7949 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7125-7674 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 71 25-7674 bp Feature: gene Location: 8247-8903 bp Feature: domain Description: pyrE Location: 8265-8898 bp Feature: domain Description: pyrE Location: 8265-8898 bp Feature: gene Location: 8954-9670 bp Feature: domain Description: rph Location: 8957-9665 bp Feature: domain Description: rph Location: 8957-9665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NLHR01000142.1 Escherichia coli strain MOD1-EC5694 MOD1-EC5694_144_length_34232_cov_80.8, whole genome shotgun sequence (34232 bp)
Overview 1 RT 1: 23785-27269 bp Neighborhood of RT #1 [23785, 27269] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 23785-23937 bp Feature: gene Location: 24007-24909 bp Feature: domain Description: DUF1281 Location: 24076-24604 bp Feature: domain Description: DUF12 81 Location: 2 4076-2 4604 bp Feature: domain Description: DUF1281_C Location: 24610-24850 bp Feature: domain Description: DUF12 81_C Location: 2 4610-2 4850 bp Feature: gene Location: 24986-26710 bp Feature: RT Description: RVT_N Location: 25043-25280 bp Feature: RT Description: RVT_N Location: 2 5043-2 52 80 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25331-25979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5331-2 5979 bp Feature: domain Description: YkfC Location: 26111-26267 bp Feature: domain Description: YkfC Location: 2 6111-2 62 67 bp Feature: domain Description: HNHc Note: nucleases Location: 26495-26654 bp Feature: domain Description: HNHc Note: nucleases Location: 2 6495-2 6654 bp Feature: gene Location: 26751-26891 bp Feature: gene Location: 26973-27269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: NLHR01000194.1 Escherichia coli strain MOD1-EC5694 MOD1-EC5694_200_length_4118_cov_64.5, whole genome shotgun sequence (4118 bp)
Overview 1 RT 1: 645-3696 bp Neighborhood of RT #1 [645, 3821] PHA02517 RVT-GII YkfC HlyC Feature: gene Location: 645-1064 bp Feature: domain Description: PHA02517 Location: 648-1053 bp Feature: domain Description: PHA02517 Location: 648-1053 bp Feature: gene Location: 1234-1365 bp Feature: gene Location: 1545-2357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1638-2217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163 8-2217 bp Feature: gene Location: 2218-3234 bp Feature: domain Description: YkfC Location: 2914-3184 bp Feature: domain Description: YkfC Location: 2914-3 184 bp Feature: gene Location: 3315-3821 bp Feature: domain Description: HlyC Location: 3336-3696 bp Feature: domain Description: HlyC Location: 3 3 3 6-3 696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YkfC (COG3344), HlyC (pfam02794), PHA02517 (putative transposase OrfB; Reviewed)