myRT

myRT report for GCA_002225635.1_ASM222563v1

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Seq: NLFU01000121.1 Escherichia coli strain MOD1-EC5747 MOD1-EC5747_121_length_2218_cov_142.307, whole genome shotgun sequence (2218 bp)
Overview 1 RT 1: 92-2217 bp Neighborhood of RT #1 [92, 2217] RVT-GII GIIM Feature: gene Location: 92-1615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1 097 bp Feature: domain Description: GIIM Note: maturase Location: 1172-1370 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 72-1 370 bp Feature: gene Location: 1909-2217 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NLFU01000065.1 Escherichia coli strain MOD1-EC5747 MOD1-EC5747_65_length_18639_cov_42.4408, whole genome shotgun sequence (18639 bp)
Overview 1 RT 1: 13642-18084 bp Neighborhood of RT #1 [13642, 18086] umuC PRK10276 RVT-GII DDE_Tnp_IS1 Feature: gene Location: 13642-14913 bp Feature: domain Description: umuC Location: 13645-14905 bp Feature: domain Description: umuC Location: 13645-14905 bp Feature: gene Location: 14913-15725 bp Feature: domain Description: PRK10276 Location: 15345-15708 bp Feature: domain Description: PRK102 76 Location: 15345-15708 bp Feature: gene Location: 15750-17237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16155-16845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16155-16845 bp Feature: gene Location: 17360-17572 bp Feature: gene Location: 17583-18086 bp Feature: domain Description: DDE_Tnp_IS1 Location: 17694-18084 bp Feature: domain Description: DDE_Tnp_IS1 Location: 17694-18084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DDE_Tnp_IS1 (pfam03400)

Seq: NLFU01000069.1 Escherichia coli strain MOD1-EC5747 MOD1-EC5747_69_length_14817_cov_23.4881, whole genome shotgun sequence (14817 bp)
Overview 1 RT 1: 7736-11625 bp Neighborhood of RT #1 [7736, 11630] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 7736-8050 bp Feature: gene Location: 8448-8645 bp Feature: gene Location: 8814-9248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9006-9222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9006-9222 bp Feature: gene Location: 9221-9874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9224-9632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9224-963 2 bp Feature: domain Description: GIIM Note: maturase Location: 9680-9872 bp Feature: domain Description: GIIM Note: maturase Location: 9680-9872 bp Feature: gene Location: 10250-10468 bp Feature: gene Location: 10599-11630 bp Feature: domain Description: LacI Location: 10641-10776 bp Feature: domain Description: LacI Location: 10641-10776 bp Feature: domain Description: PBP1_GntR Location: 10815-11625 bp Feature: domain Description: PBP1_GntR Location: 10815-11625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)

Seq: NLFU01000072.1 Escherichia coli strain MOD1-EC5747 MOD1-EC5747_72_length_13575_cov_44.921, whole genome shotgun sequence (13575 bp)
Overview 1 RT 1: 8600-12187 bp Neighborhood of RT #1 [8600, 12204] DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 COG3436 Feature: gene Location: 8600-8797 bp Feature: gene Location: 9038-9184 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 9050-9161 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 9050-9161 bp Feature: gene Location: 9300-10532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9501-10155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9501-10155 bp Feature: domain Description: GIIM Note: maturase Location: 10233-10455 bp Feature: domain Description: GIIM Note: maturase Location: 10233-104 55 bp Feature: gene Location: 10994-11776 bp Feature: domain Description: DDE_Tnp_IS66 Location: 11000-11735 bp Feature: domain Description: DDE_Tnp_IS66 Location: 11000-11735 bp Feature: gene Location: 11839-12204 bp Feature: domain Description: COG3436 Location: 11917-12187 bp Feature: domain Description: COG34 36 Location: 11917-12187 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), COG3436 (Transposase ), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388)